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CXX_STD = CXX11 from src/Makevars;
the package now builds with the default C++17 standard..bdinfo).
vcftobd5() — convert a bgzipped VCF file to Format
5.getbd5info() — load and validate a Format 5 file
pair.getbd5snp() — read a single SNP from a Format 5 file by
index or ID.vcftobd() as the new recommended function for
converting VCF files to binary dosage format (requires the vcfppR
package). The previous vcftobd() has been renamed to
vcftobdlegacy() and emits a deprecation message.updatebd() to convert any legacy binary dosage
file (formats 1–4) to Format 5.subsetbd() to create a new Format 5 file
containing a subset of SNPs and/or subjects from any binary dosage file
(formats 1–5). Filtering options: minimum MAF, SNP location vector, SNP
location range, and subject ID vector.mergebd() to merge two or more Format 5 files
into a single Format 5 file. Automatically performs a subject merge
(unique subjects, common SNPs) or a SNP merge (unique SNPs, common
subjects) depending on the input files.getsnp() and bdapply() to support
Format 5 files.First release version.
NEWS.md file to track changes to the
package.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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