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BOLDconnectR 1.0.1

New features

• Added a new BOLDconnectR workflow vignette.
• Updated bold.analyze.tree to include the ape::DNAbin object in the returned results.
• Added a Barcode Core Data Model (BCDM) test data set named test.data2

Improvements

• Improved error messages in bold.public.search, including clearer handling of the 1M-record limit.
• Enhanced tryCatch handling across all steps in bold.public.search.
• Optimized bold.fetch by ensuring bold.bcdm.fields is called only once per run.
• Replaced dcast() with pivot_wider() in gen.comm.mat.
• Reformatted code using styler.

Bug fixes

• Added support for the taxon.name argument in bold.analyze.diversity.
• Added error handling for empty data frames in bold.analyze.diversity.
• Updated the start and end date error message in bold.full.search
• Fixed sequence alignment output conversion to improve compatibility with updated Bioconductor packages.

Miscellaneous

• Updated author list.
• Introduced NEWS.md to document versioned package changes.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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