BOLDconnectR: Retrieve, Transform and Analyze the Barcode of Life Data Systems Data

Facilitates retrieval, transformation and analysis of the data from the Barcode of Life Data Systems (BOLD) database <https://boldsystems.org/>. This package allows both public and private user data to be easily downloaded into the R environment using a variety of inputs such as: IDs (processid, sampleid), BINs, dataset codes, project codes, taxonomy, geography etc. It provides frictionless data conversion into formats compatible with other R-packages and third-party tools, as well as functions for sequence alignment & clustering, biodiversity analysis and spatial mapping.

Version:	1.0.0
Depends:	R (≥ 4.0.0)
Imports:	ape (≥ 5.5), BAT (≥ 2.0), data.table (≥ 1.13), dplyr (≥ 1.0.1), ggplot2 (≥ 3.3.2), httr (≥ 1.4.2), jsonlite (≥ 1.7), maps (≥ 3.3), methods, reshape2, rnaturalearth, sf (≥ 0.9.4), skimr (≥ 2.1.2), tidyr (≥ 1.1.1), utils, vegan (≥ 2.5.7)
Suggests:	Biostrings, BiocManager, msa, muscle
Published:	2025-09-17
Author:	Sameer Padhye [aut, cre], Liliana Ballesteros-Mejia [aut], Sujeevan Ratnasingham [aut]
Maintainer:	Sameer Padhye <spadhye at uoguelph.ca>
License:	MIT + file LICENSE
NeedsCompilation:	no
Materials:	README
CRAN checks:	BOLDconnectR results

Documentation:

Reference manual:

BOLDconnectR.html , BOLDconnectR.pdf

Downloads:

Package source:	BOLDconnectR_1.0.0.tar.gz
Windows binaries:	r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries:	r-release (arm64): BOLDconnectR_1.0.0.tgz, r-oldrel (arm64): BOLDconnectR_1.0.0.tgz, r-release (x86_64): BOLDconnectR_1.0.0.tgz, r-oldrel (x86_64): BOLDconnectR_1.0.0.tgz

Linking:

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