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inst/examples/run_all.R now writes figures to
tempdir() instead of the working directory, in line with
CRAN policy.\usage line in bk_diversity.Rd
to satisfy the Rd line-width check (CRAN incoming pre-test); no
user-visible change.inst/WORDLIST documenting the plant-breeding
terms flagged by the spell checker (all correct).bk_diallel() — Griffing (1956) diallel analysis,
Method 2 (parents + one set of F1s, no reciprocals), Model I (fixed):
combining-ability ANOVA (GCA, SCA), parental GCA effects, SCA matrix,
Baker’s predictability ratio and variance components. Standard errors
are computed exactly by propagating the per-entry error variance through
the linear estimators (no tabulated constants).bk_plot() gains a bk_diallel method: GCA
effect bars (default) and an SCA heatmap
(type = "sca").bk_data("diallel") — 6-parent half
diallel, 3 reps.bk_lxt() — Line x Tester combining-ability
analysis: combining-ability ANOVA (crosses partitioned into lines,
testers and line x tester), GCA effects for lines and testers, SCA
effects per cross, proportional contributions, and GCA/SCA variance
components with additive/dominance variances, average degree of
dominance and predictability ratio.bk_plot() gains a bk_lxt method: GCA
effect bars (default) and an SCA heatmap
(type = "sca").bk_data("lxt") — 5 lines x 3
testers, 3 replications.First release.
bk_rbd(), bk_frbd(),
bk_augmented() (Augmented Alpha-Lattice and Augmented
RCBD).bk_variability(),
bk_correlation(), bk_path(),
bk_diversity() (Mahalanobis D² with Tocher and Ward
clustering), bk_stability() (Eberhart-Russell + AMMI).bk_plot() verb returns a publication-ready
ggplot2 figure for every result, using the bespoke
theme_bk() and bk_palette() colour
system.bk_data().inst/examples/run_all.R.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.