The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

BGmisc 1.4.1

• replaced print with message in all functions
• Exposed several internal functions to the user
• refactored addPhantomParents to be more efficient
• add mtdna and mitochondria as aliases for mitochondrial
• reorganized unit tests
• introduces the new calculateCIs function for computing confidence intervals for correlation coefficients
• added comprehensive tests and corresponding documentation updates for calculateCI

BGmisc 1.4.0

• revived checkParents function to check for handling phantom parents and missing parents
• added tests for checkParents function
• added GoT analysis
• reduced complexity of com2links, summarizePedigree, and checkIDs with the use of subfunctions
• allow verbose argument to be passed to standardizeColnames
• list SimPed and related_coef as aliases for functions
• harmonizing function names like calcFamilySize from famSizeCal
• implemented adjBeta function to evaluation alternative build method
• reorganize file names to be more consistent
• harmonized famID

BGmisc 1.3.5.1

• Setting the default for the sparse argument in ped2com() to TRUE

BGmisc 1.3.5

• Add calculateCIs and readDelimitedData functions
• Added ASOIAF pedigree
• Added com2links() function to convert components to kinship links, with accompanying tests
• Added extractWikiFamilyTree() function to parse family trees from wiki templates, with accompanying tests
• Created vignette demonstrating adjacency matrix methods and applications
• Improved plotPedigree() function by silencing unnecessary invisible list outputs
• Added checkPedigreeNetwork() function for validating pedigree network structure, with accompanying tests

BGmisc 1.3.4.1

• Hot fix to resolve issue with list of adjacency matrix not loading saved version
• Reoptimized generation calculation

BGmisc 1.3.4

• Added alternative (and faster) methods to create the adjacency matrix
• Add tests for comparison of adjacency matrix build methods
• Added Royal Family pedigree

BGmisc 1.3.3

• Added ability to save and reload pedigree objects that are used by ped2Com
• Optimized generation calculation
• Added more tests for summarizePedigree
• enhanced documentation

BGmisc 1.3.2.1

• Added ability to pass additional arguments to the ped2FOO functions

BGmisc 1.3.2

• Added some more tests of identifyModel.R
• Modified tests to be MKL friendly

BGmisc 1.3.1

• Confirmed that all orcids are correct
• Added gedcom importer

BGmisc 1.3.0.1

• Created subfunctions to reduce function complexity

BGmisc 1.3.0

• Harmonized function names
• Fixed incorrectly spelled last name in Potter pedigree
• Added function to summarize variables by family, matrilinael, and patrilineal lines
• Added within row duplicate ID checks
• Added data validation vignettes
• Harmonized function names and arguments

BGmisc 1.2.1

• Added alternative transpose options for the matrix
• Added generalization of Falconer’s formula

BGmisc 1.2.0

• Added numerous code checks, increased code coverage to 85%
• Replaced sapply usage
• Added additional data validation checks
• Accompanying paper published in the Journal of Open Source Software

BGmisc 1.1.0

• Added ability to simulate twins
• Can now trace paternal and maternal lines
• There’s now a Harry Potter pedigree

BGmisc 1.0.1

• Hot fix to resolve plotPedigree wrapper function breaking for pedigrees that contained multiple families

BGmisc 1.0

• Added major update to include simulations, plotting, and examples.

BGmisc 0.1

• Added a NEWS.md file to track changes to the package.
• Initial version launched

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.