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BAMMtools: Analysis and Visualization of Macroevolutionary Dynamics on
Phylogenetic Trees
Provides functions for analyzing and visualizing complex
macroevolutionary dynamics on phylogenetic trees. It is a companion
package to the command line program BAMM (Bayesian Analysis of
Macroevolutionary Mixtures) and is entirely oriented towards the analysis,
interpretation, and visualization of evolutionary rates. Functionality
includes visualization of rate shifts on phylogenies, estimating
evolutionary rates through time, comparing posterior distributions of
evolutionary rates across clades, comparing diversification models using
Bayes factors, and more.
| Version: |
2.1.12 |
| Depends: |
ape, R (≥ 2.10) |
| Imports: |
Rcpp (≥ 0.11.0), gplots, methods |
| Suggests: |
parallel |
| Published: |
2024-09-12 |
| DOI: |
10.32614/CRAN.package.BAMMtools |
| Author: |
Dan Rabosky [aut],
Michael Grundler [aut],
Pascal Title 
[aut, cre],
Carlos Anderson [aut],
Jeff Shi [aut],
Joseph Brown [aut],
Huateng Huang [aut],
Jon Mitchell [aut] |
| Maintainer: |
Pascal Title <ptitle at umich.edu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
http://bamm-project.org/ |
| NeedsCompilation: |
yes |
| Citation: |
BAMMtools citation info |
| In views: |
Phylogenetics |
| CRAN checks: |
BAMMtools results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=BAMMtools
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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