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Apoderoides: Prioritize and Delete Erroneous Taxa in a Large Phylogenetic Tree

Finds, prioritizes and deletes erroneous taxa in a phylogenetic tree. This package calculates scores for taxa in a tree. Higher score means the taxon is more erroneous. If the score is zero for a taxon, the taxon is not erroneous. This package also can remove all erroneous taxa automatically by iterating score calculation and pruning taxa with the highest score.

Version: 3.0.0
Depends: R (≥ 3.5.0)
Imports: ape, Rcpp, RcppProgress
LinkingTo: Rcpp, RcppProgress
Suggests: knitr, rmarkdown
Published: 2024-07-10
DOI: 10.32614/CRAN.package.Apoderoides
Author: Satoshi Aoki [aut, cph, cre], Keita Fukasawa [ctb]
Maintainer: Satoshi Aoki <aokis1ll1 at gmail.com>
BugReports: https://github.com/Sa-to-shi-A-o-ki/Apoderoides/issues
License: MIT + file LICENSE
URL: https://github.com/Sa-to-shi-A-o-ki/Apoderoides
NeedsCompilation: yes
Materials: NEWS
CRAN checks: Apoderoides results

Documentation:

Reference manual: Apoderoides.pdf
Vignettes: Apoderoides Tutorial

Downloads:

Package source: Apoderoides_3.0.0.tar.gz
Windows binaries: r-devel: Apoderoides_3.0.0.zip, r-release: Apoderoides_3.0.0.zip, r-oldrel: Apoderoides_3.0.0.zip
macOS binaries: r-release (arm64): Apoderoides_3.0.0.tgz, r-oldrel (arm64): Apoderoides_3.0.0.tgz, r-release (x86_64): Apoderoides_3.0.0.tgz, r-oldrel (x86_64): Apoderoides_3.0.0.tgz
Old sources: Apoderoides archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=Apoderoides to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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