Apoderoides: Prioritize and Delete Erroneous Taxa in a Large Phylogenetic Tree

Finds, prioritizes and deletes erroneous taxa in a phylogenetic tree. This package calculates scores for taxa in a tree. Higher score means the taxon is more erroneous. If the score is zero for a taxon, the taxon is not erroneous. This package also can remove all erroneous taxa automatically by iterating score calculation and pruning taxa with the highest score.

Version:	3.0.0
Depends:	R (≥ 3.5.0)
Imports:	ape, Rcpp, RcppProgress
LinkingTo:	Rcpp, RcppProgress
Suggests:	knitr, rmarkdown
Published:	2024-07-10
DOI:	10.32614/CRAN.package.Apoderoides
Author:	Satoshi Aoki [aut, cph, cre], Keita Fukasawa [ctb]
Maintainer:	Satoshi Aoki <aokis1ll1 at gmail.com>
BugReports:	https://github.com/Sa-to-shi-A-o-ki/Apoderoides/issues
License:	MIT + file LICENSE
URL:	https://github.com/Sa-to-shi-A-o-ki/Apoderoides
NeedsCompilation:	yes
Materials:	NEWS
CRAN checks:	Apoderoides results

Documentation:

Reference manual:	Apoderoides.pdf
Vignettes:	Apoderoides Tutorial

Downloads:

Package source:	Apoderoides_3.0.0.tar.gz
Windows binaries:	r-devel: Apoderoides_3.0.0.zip, r-release: Apoderoides_3.0.0.zip, r-oldrel: Apoderoides_3.0.0.zip
macOS binaries:	r-release (arm64): Apoderoides_3.0.0.tgz, r-oldrel (arm64): Apoderoides_3.0.0.tgz, r-release (x86_64): Apoderoides_3.0.0.tgz, r-oldrel (x86_64): Apoderoides_3.0.0.tgz
Old sources:	Apoderoides archive

Linking:

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