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AnanseSeurat: Construct ANANSE GRN-Analysis Seurat
Enables gene regulatory network (GRN) analysis on single cell clusters,
using the GRN analysis software 'ANANSE', Xu et al.(2021) <doi:10.1093/nar/gkab598>.
Export data from 'Seurat' objects, for GRN analysis by 'ANANSE'
implemented in 'snakemake'. Finally, incorporate results for visualization
and interpretation.
| Version: |
1.2.0 |
| Depends: |
R (≥ 3.50) |
| Imports: |
dplyr, ggplot2, ggpubr, magrittr, patchwork, png, purrr, rlang, Seurat, stringr, utils |
| Suggests: |
covr, knitr, rmarkdown, Signac, testthat (≥ 3.0.0) |
| Published: |
2023-11-11 |
| Author: |
Jos Smits  [aut,
cre, cph],
Huiqing Jo Zhou
[aut, fnd, cph] |
| Maintainer: |
Jos Smits <Jsmits at science.ru.nl> |
| BugReports: |
https://github.com/JGASmits/AnanseSeurat/issues |
| License: |
Apache License (≥ 2) |
| URL: |
https://github.com/JGASmits/AnanseSeurat/ |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
AnanseSeurat results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=AnanseSeurat
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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