AlphaPart: Partition/Decomposition of Breeding Values by Paths of Information
A software that implements a method for partitioning genetic trends to quantify the sources of genetic gain in breeding programmes. The partitioning method is described in Garcia-Cortes et al. (2008) <doi:10.1017/S175173110800205X>. The package includes the main function AlphaPart for partitioning breeding values and auxiliary functions for manipulating data and summarizing, visualizing, and saving results.
| Version: | 0.9.8 |
| Depends: | R (≥ 3.5.0) |
| Imports: | directlabels (≥ 1.1), ggplot2 (≥ 0.8.9), pedigree (≥ 1.3.1), Rcpp (≥ 0.9.4), methods (≥ 3.6.2), reshape, dplyr, magrittr, tibble (≥ 3.1.7) |
| LinkingTo: | Rcpp |
| Suggests: | RColorBrewer (≥ 1.0-2), truncnorm (≥ 1.0-5), knitr, rmarkdown, testthat (≥ 3.0.0), covr, ggridges (≥ 0.5.3) |
| Published: | 2022-11-15 |
| DOI: | 10.32614/CRAN.package.AlphaPart |
| Author: | Gregor Gorjanc 
[aut, cre],
Jana Obsteter
[aut],
Thiago de Paula Oliveira
[aut] |
| Maintainer: | Gregor Gorjanc <highlander.research.lab at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | AlphaPart results |
Documentation:
| Reference manual: | AlphaPart.pdf |
| Vignettes: |
PartitioningVariance AlphaPart |
Downloads:
| Package source: | AlphaPart_0.9.8.tar.gz |
| Windows binaries: | r-devel: AlphaPart_0.9.8.zip, r-release: AlphaPart_0.9.8.zip, r-oldrel: AlphaPart_0.9.8.zip |
| macOS binaries: | r-release (arm64): AlphaPart_0.9.8.tgz, r-oldrel (arm64): AlphaPart_0.9.8.tgz, r-release (x86_64): AlphaPart_0.9.8.tgz, r-oldrel (x86_64): AlphaPart_0.9.8.tgz |
| Old sources: | AlphaPart archive |
Linking:
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