The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
We developed a lightweight machine learning tool for RNA profiling of acute lymphoblastic leukemia (ALL), however, it can be used for any problem where multiple classes need to be identified from multi-dimensional data. The methodology is described in Makinen V-P, Rehn J, Breen J, Yeung D, White DL (2022) Multi-cohort transcriptomic subtyping of B-cell acute lymphoblastic leukemia, International Journal of Molecular Sciences 23:4574, <doi:10.3390/ijms23094574>. The classifier contains optimized mean profiles of the classes (centroids) as observed in the training data, and new samples are matched to these centroids using the shortest Euclidean distance. Centroids derived from a dataset of 1,598 ALL patients are included, but users can train the models with their own data as well. The output includes both numerical and visual presentations of the classification results. Samples with mixed features from multiple classes or atypical values are also identified.
Version: | 1.0.7 |
Imports: | methods |
Suggests: | knitr, rmarkdown |
Published: | 2023-01-20 |
DOI: | 10.32614/CRAN.package.Allspice |
Author: | Ville-Petteri Makinen [aut, cre] |
Maintainer: | Ville-Petteri Makinen <vpmakine at gmail.com> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
NeedsCompilation: | no |
Citation: | Allspice citation info |
CRAN checks: | Allspice results |
Reference manual: | Allspice.pdf |
Vignettes: |
intro |
Package source: | Allspice_1.0.7.tar.gz |
Windows binaries: | r-devel: Allspice_1.0.7.zip, r-release: Allspice_1.0.7.zip, r-oldrel: Allspice_1.0.7.zip |
macOS binaries: | r-release (arm64): Allspice_1.0.7.tgz, r-oldrel (arm64): Allspice_1.0.7.tgz, r-release (x86_64): Allspice_1.0.7.tgz, r-oldrel (x86_64): Allspice_1.0.7.tgz |
Old sources: | Allspice archive |
Please use the canonical form https://CRAN.R-project.org/package=Allspice to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.