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AiES: Axon Integrity Evaluation System for Microscopy Images
Provides tools for the quantitative analysis of axon integrity in microscopy images.
It implements image pre-processing, adaptive thresholding, feature extraction, and support vector machine-based classification to compute indices such as the Axon Integrity Index (AII) and Degeneration Index (DI).
The package is designed for reproducible and automated analysis in neuroscience research.
| Version: |
0.99.6 |
| Imports: |
EBImage, e1071, stats, fs, data.table |
| Suggests: |
utils, stringr, colorspace, dplyr, knitr, tcltk, rstudioapi, svDialogs |
| Published: |
2025-06-06 |
| DOI: |
10.32614/CRAN.package.AiES |
| Author: |
Shinji Tokunaga 
[aut, cre],
Masafumi Funakoshi [ctb],
Toshiyuki Araki
[ctb] |
| Maintainer: |
Shinji Tokunaga <tokunaga at ncnp.go.jp> |
| BugReports: |
https://github.com/BreezyCave/AiES/issues |
| License: |
BSD_3_clause + file LICENSE |
| Copyright: |
2025 National Center of Neurology and Psychiatry |
| URL: |
https://github.com/BreezyCave/AiES |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
AiES results |
Documentation:
Downloads:
Linking:
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https://CRAN.R-project.org/package=AiES
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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