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ABC.RAP: Array Based CpG Region Analysis Pipeline

It aims to identify candidate genes that are “differentially methylated” between cases and controls. It applies Student’s t-test and delta beta analysis to identify candidate genes containing multiple “CpG sites”.

Version: 0.9.0
Depends: R (≥ 3.1.0)
Imports: graphics, stats, utils
Suggests: knitr, rmarkdown
Published: 2016-10-20
DOI: 10.32614/CRAN.package.ABC.RAP
Author: Abdulmonem Alsaleh [cre, aut], Robert Weeks [aut], Ian Morison [aut], RStudio [ctb]
Maintainer: Abdulmonem Alsaleh <a.alsaleh at hotmail.co.nz>
Contact: Ian Morison <ian.morison@otago.ac.nz>
License: GPL-3
NeedsCompilation: no
SystemRequirements: GNU make
CRAN checks: ABC.RAP results

Documentation:

Reference manual: ABC.RAP.pdf
Vignettes: Array Based CpG Region Analysis Package (ABC.RAP)

Downloads:

Package source: ABC.RAP_0.9.0.tar.gz
Windows binaries: r-devel: ABC.RAP_0.9.0.zip, r-release: ABC.RAP_0.9.0.zip, r-oldrel: ABC.RAP_0.9.0.zip
macOS binaries: r-release (arm64): ABC.RAP_0.9.0.tgz, r-oldrel (arm64): ABC.RAP_0.9.0.tgz, r-release (x86_64): ABC.RAP_0.9.0.tgz, r-oldrel (x86_64): ABC.RAP_0.9.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=ABC.RAP to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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