Functions and mined database from 'UniProt' focusing on post-translational modifications to do single enrichment analysis (SEA) and protein set enrichment analysis (PSEA). Payman Nickchi, Mehdi Mirzaie, Marc Baumann, Amir Ata Saei, Mohieddin Jafari (2022) <bioRxiv:10.1101/2022.11.09.515610>.

Several functions introduced in Aster et al.'s book on inverse theory. The functions are often translations of MATLAB code developed by the authors to illustrate concepts of inverse theory as applied to geophysics. Generalized inversion, tomographic inversion algorithms (conjugate gradients, 'ART' and 'SIRT'), non-linear least squares, first and second order Tikhonov regularization, roughness constraints, and procedures for estimating smoothing parameters are included.

Bayesian supervised predictive classifiers, hypothesis testing, and parametric estimation under Partition Exchangeability are implemented. The two classifiers presented are the marginal classifier (that assumes test data is i.i.d.) next to a more computationally costly but accurate simultaneous classifier (that finds a labelling for the entire test dataset at once based on simultanous use of all the test data to predict each label). We also provide the Maximum Likelihood Estimation (MLE) of the only underlying parameter of the partition exchangeability generative model as well as hypothesis testing statistics for equality of this parameter with a single value, alternative, or multiple samples. We present functions to simulate the sequences from Ewens Sampling Formula as the realisation of the Poisson-Dirichlet distribution and their respective probabilities.

Historic Pell grant data as provided by the US Department of Education. 
    This package contains data about how much pell grant was awarded by which institution in 
    which year. 
    This data comes from the US Department of Education. Raw data can be downloaded from here: <https://www2.ed.gov/finaid/prof/resources/data/pell-institution.html>.

An R-Shiny application implementing a method of sexing the human os coxae based on logistic regressions and Bruzek's nonmetric traits <doi:10.1002/ajpa.23855>.