Depends: R (>= 3.5.0)
Imports: RCy3, formatR, dplyr, stringr, utils, grDevices

Suggests: ape, knitr, rmarkdown, testthat (>= 0.9.0)

Imports: magrittr, dplyr, nortest, mclust, scDHA

Depends: R (>= 2.10)
Imports: Seurat, ggplot2, stringr, clustree, magrittr, Matrix, dplyr,
patchwork

Imports: ALL, ConsensusClusterPlus, scatterplot3d, ggplot2, Rtsne,
limma, edgeR, TPEA, Rmisc, lattice, plyr, ggthemes, reshape2,
PerformanceAnalytics, corrplot, Hmisc, igraph, survival

Depends: R (>= 3.60)
Imports: limma, S4Vectors, SingleCellExperiment, stats,
SummarizedExperiment, utils, uwot

Depends: R (>= 3.4.0)
Imports: cli, corrr, dplyr, ggplot2, ggrepel, glue, lifecycle,
magrittr, methods, purrr, rlang (>= 1.1.0), stats, stringr,
tibble, tidyr, tidyselect
Suggests: knitr, pkgload, rmarkdown, testthat (>= 3.0.0)

Suggests: covr, httptest, knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 4.00)
Imports: dplyr, ggplot2, magrittr, spatstat.geom, crayon, ggpubr,
pbmcapply, spatstat.random, tidyr, utils, methods, proxy
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), spatialTIME

Imports: pbapply, RSpectra, Matrix, methods, stats, utils, MASS,
scTenifoldNet
Suggests: testthat (>= 2.1.0)

Imports: pbapply, RSpectra, Matrix, methods, stats, utils, MASS,
RhpcBLASctl
Suggests: testthat (>= 2.1.0)

Depends: R (>= 3.5), future (>= 1.6.2)
Imports: ggplot2, Synth, stringr, stats, cvTools, furrr, dplyr, purrr,
tidyr, magrittr
Suggests: testthat (>= 3.0.0), knitr, rmarkdown

Imports: dplyr, magrittr, MASS, Matrix (>= 1.5-0), methods,
future.apply, future, ggplot2, reshape2, rlang, gridExtra,
matrixStats
LinkingTo: RcppArmadillo, Rcpp (>= 0.11.0)

Imports: ggplot2, Matrix, scales, assertthat, dplyr, viridis,
viridisLite, methods
Suggests: testthat, tibble

Imports: ggExtra, ggplot2, graphics, plotly, scales, stats, utils

Imports: glmnet, glasso, huge, POET, stats

Suggests: httr, rjson, grid, knitr, rmarkdown, multigraph

Depends: R (>= 3.5.0)
Imports: methods, stats, dplyr, ggplot2, grid, car

Imports: methods, grid, linbin, grImport2, readxl