Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

Rasterize only specific layers of a 'ggplot2' plot while simultaneously keeping all labels and text in vector format. This allows users to keep plots within the reasonable size limit without loosing vector properties of the scale-sensitive information.

You can use this function to easily draw a combined histogram and restricted cubic spline. 
    The function draws the graph through 'ggplot2'. RCS fitting requires the use of the rcs() function of the 'rms' package. 
    Can fit cox regression, logistic regression. This method was described by Per Kragh (2003) <doi:10.1002/sim.1497>.

Provides 'ggplot2' extensions for political map making. Implements
    new geometries for groups of simple feature geometries. Adds palettes and scales 
    for red to blue color mapping and for discrete maps. Implements tools for easy 
    label generation and placement, automatic map coloring, and themes.

Provides text and label geoms for 'ggplot2' that help to avoid
    overlapping text labels. Labels repel away from each other and away from the
    data points.

An R package for creating panels of diagnostic plots for residuals from a model 
    using ggplot2 and plotly to analyze residuals and model assumptions from a variety of 
    viewpoints. It also allows for the creation of interactive diagnostic plots.

Provides functions that make it easy to reveal 'ggplot2' graphs incrementally. The functions take a plot produced with 'ggplot2' and return a list of plots showing data incrementally by panels, layers, groups, the values in an axis or any arbitrary aesthetic.