Imports: rrcov, robustbase, cellWise, ggplot2, methods

Imports: Rcpp (>= 0.11.2), ontologyIndex (>= 2.0)

Depends: R (>= 3.5.0)
Imports: aplot, DOSE, dplyr, ggplot2, ggpp, ggrepel, ggsci, grDevices,
magrittr, purrr, RColorBrewer, reshape2, stringr, tibble, utils

Imports: SAM, penalized, gdata, stats, utils

Depends: R (>= 4.4)
Imports: Biobase, limma, Rdpack, singscore, GSVA, progress, pbapply,
doParallel, parallel, BiocParallel, metafor, RColorBrewer,
pheatmap, methods, scales, plyr, grDevices, stats, impute
Suggests: BiocStyle, qpdf, BiocGenerics, RUnit, knitr, rmarkdown

Suggests: knitr, rmarkdown, testthat, ggplot2, gridExtra,
microbenchmark, covr

Depends: R (>= 3.5.0)
Imports: countrycode, curl, data.table (>= 1.15.4), R.utils, stats,
utils, withr
Suggests: bit64, dplyr, ggplot2, gridExtra, knitr, mapproj, maps,
rmarkdown, roxyglobals, spelling, testthat, tidyr

Imports: jsonlite, methods, rlang, stats, tidyr, utils

Depends: R (>= 2.10)
Imports: dplyr, FactoMineR, ggplot2, MASS, MLmetrics, nnet, PCAmixdata,
reshape2, rlang
Suggests: knitr, lmtest, patchwork, rmarkdown, superpc, testthat (>=
3.0.0)

Imports: Iso (>= 0.0-17), splines, stats, zoo (>= 1.7-12)

Depends: R (>= 3.5.0)
Imports: base, cluster, stats, survival, utils, visNetwork,
ComplexHeatmap, circlize, devtools
Suggests: rmarkdown, knitr, testthat (>= 3.0.0)

Depends: R (>= 2.10)
Imports: utils, stats, graphics, methods, lattice, sp (>= 0.9-72), zoo,
sf (>= 0.7-2), sftime, spacetime (>= 1.2-8), stars, FNN
Suggests: fields, maps, mapdata, xts, raster, future, future.apply

Depends: proto
Suggests: boot, chron, grid, lattice, quantreg, svUnit, tcltk, zoo

Suggests: digest (>= 0.6.31), fontawesome (>= 0.5.2), ggplot2, grid,
gtable, katex (>= 1.4.1), knitr, lubridate, magick, paletteer,
RColorBrewer, rmarkdown (>= 2.20), rsvg, rvest, shiny (>=
1.9.1), testthat (>= 3.1.9), tidyr, webshot2 (>= 0.1.0), withr

Depends: R (>= 3.5)
Imports: cli, glue, grid, lifecycle, rlang (>= 1.1.0)
Suggests: covr, ggplot2, knitr, profvis, rmarkdown, testthat (>= 3.0.0)