Computes 46 optimized distance and similarity measures for comparing probability functions (Drost (2018) <doi:10.21105/joss.00765>). These comparisons between probability functions have their foundations in a broad range of scientific disciplines from mathematics to ecology. The aim of this package is to provide a core framework for clustering, classification, statistical inference, goodness-of-fit, non-parametric statistics, information theory, and machine learning tasks that are based on comparing univariate or multivariate probability functions.

Control Philips Hue smart lighting. Use this package to
    connect to a Hue bridge on your local network (remote authentication
    not yet supported) and control your smart lights through the Philips
    Hue API. All API V1 endpoints are supported. See API documentation at
    <https://developers.meethue.com/>.

Proportional hazards estimation in the presence of a partially monotone likelihood has difficulties, in that finite estimators do not exist.  These difficulties are related to those arising from logistic and multinomial regression.  References for methods are given in the separate function documents.  Supported by grant NSF DMS 1712839.

A bioinformatics method developed for analyzing the heterogeneity of single-cell populations. Phitest provides an objective and automatic method to evaluate the performance of clustering and quality of cell clusters.

Functions to extract and handle commonly occurring principal phrases
    obtained from collections of texts.

Perform a differential analysis at pathway level based on metabolite quantifications and information on pathway metabolite composition.
  The method is based on a Principal Component Analysis step and on a linear mixed model.
  Automatic query of metabolic pathways is also implemented.

Implementation of the Phoenix and Phoenix-8 Sepsis Criteria as
    described in "Development and Validation of the Phoenix Criteria for
    Pediatric Sepsis and Septic Shock" by Sanchez-Pinto, Bennett, DeWitt,
    Russell et al. (2024) <doi:10.1001/jama.2024.0196> (Drs. Sanchez-Pinto
    and Bennett contributed equally to this manuscript; Dr. DeWitt and Mr.
    Russell contributed equally to the manuscript), "International Consensus
    Criteria for Pediatric Sepsis and Septic Shock" by Schlapbach, Watson,
    Sorce, Argent, et al. (2024) <doi:10.1001/jama.2024.0179> (Drs Schlapbach,
    Watson, Sorce, and Argent contributed equally) and the application note
    "phoenix: an R package and Python module for calculating the Phoenix
    pediatric sepsis score and criteria" by DeWitt, Russell, Rebull,
    Sanchez-Pinto, and Bennett (2024) <doi:10.1093/jamiaopen/ooae066>.