Imports: ggplot2, Rata, reshape2, Rirt, stats

Imports: MASS, RMTstat, lpSolve, mpoly, nleqslv, pracma, rARPACK,
rootSolve, quadprog
Suggests: knitr, rmarkdown

Imports: dbscan, geigen, glmnet, graphics, Matrix, plotly, rTensor,
stats

Depends: R (>= 3.3)
Imports: utils, stats, methods, graphics, grDevices, MASS, bigmemory
LinkingTo: Rcpp, RcppArmadillo, RcppEigen, RcppProgress, BH, bigmemory
Suggests: knitr, testthat, rmarkdown

Imports: dplyr (>= 1.0.1), ggplot2, lubridate, magrittr, pdp, purrr (>=
1.0.0), ranger, stringr, strucchange, tibble, viridis, tidyr,
cli

Suggests: eRm, psychotools, ltm, mirt, TAM

Imports: httr, dplyr, lubridate, stringr, purrr, tidyr

Imports: jsonlite, jsonvalidate, knitr, methods, ontologyIndex,
rmarkdown, R6, R6P, testthat, tools

Depends: seqinr, GenomicRanges, stats
Imports: ggplot2, reshape2, MASS, mixtools, utils, S4Vectors,
patchwork, doParallel, igraph, R4RNA, RColorBrewer, IRanges,
foreach,grDevices, heatmap3, TopDom, tidyverse, RRNA, ggrepel,
methods, parallel, ClassDiscovery
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Imports: plgp, stats, lhs, doParallel, foreach

Imports: igraph (>= 1.0), hot.deck, PoiClaClu, glmnet, methods, utils

Depends: R (>= 4.0)
Imports: AnnotationHub, AnnotationFilter, BiocGenerics, ensembldb,
circlize, DESeq2, SummarizedExperiment, ComplexHeatmap,
matrixStats, grid, ggpointdensity, ggrepel, ggplot2, cowplot,
patchwork, purrr, dplyr, stringr, tidyr, tibble, tidyselect,
magrittr
Suggests: rmarkdown, knitr, recount3, apeglm, ggrastr, gghighlight

Suggests: here, httptest, knitr, rmarkdown, testthat

Suggests: devtools (>= 1.10.0), dplyr, ggplot2, ggrepel, knitr (>=
1.12.3), lifecycle (>= 1.0.3), pbapply, purrr, rlang,
rmarkdown, rnaturalearthdata (>= 0.1.0), rnaturalearthhires (>=
0.1.0), testthat (>= 0.9.1), tmap

Suggests: knitr (>= 1.12.3), testthat (>= 0.9.1)

Suggests: covr, httptest, testthat (>= 2.1.0), knitr, rmarkdown,
ggplot2

Depends: R (>= 2.10), maps
Imports: RColorBrewer, abind, fields, tgp, tcltk, graphics, sp

Imports: Rcpp (>= 0.11.0), progress (>= 1.1.2), stats