Provides a graphical user interface to integrate, visualize and explore results 
            from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid 
            species. The app is meant for interactive use and allows users to optionally upload different sources 
            of information, including  gene annotation and alignment files, enabling the exploitation and search for 
            candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 
            'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.

A collection of functions to make R a more effective viewscape analysis 
    tool for calculating viewscape metrics based on computing the viewable area for 
    given a point/multiple viewpoints and a digital elevation model.The method of calculating 
    viewscape metrics implemented in this package are based on the work of 
    Tabrizian et al. (2020) <doi:10.1016/j.landurbplan.2019.103704>. The algorithm of computing 
    viewshed is based on the work of 
    Franklin & Ray. (1994) <https://citeseerx.ist.psu.edu/document?repid=rep1&type=pdf&doi=555780f6f5d7e537eb1edb28862c86d1519af2be>.

Conducts linear regression using variational Bayesian inference, particularly optimized for genome-wide association mapping and whole-genome prediction which use a number of DNA markers as the explanatory variables. Provides seven regression models which select the important variables (i.e., the variables related to response variables) among the given explanatory variables in different ways (i.e., model structures).

Inference methods for state-space models, relying on the Kalman Filter or on Viking (Variational Bayesian VarIance tracKING). See J. de Vilmarest (2022) <https://theses.hal.science/tel-03716104/>.

This is a package for creating and running Agent Based Models (ABM). It provides a set of base classes with core functionality to allow bootstrapped models. For more intensive modeling, the supplied classes can be extended to fit researcher needs.