Imports: ggplot2, lifecycle, magrittr, scales, stats, visNetwork
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.5.0)
Imports: coda, digest, extraDistr, graphics, grDevices, lubridate,
magrittr, memoise, methods, mvtnorm, nnet, progress, stats,
topicmodels, viridis
Suggests: knitr, pkgdown, rmarkdown, testthat, vdiffr

Imports: parallel, topicmodels, slam, Rmpfr, ggplot2, reshape2, scales,
grid

Suggests: mallet, lda, topicmodels, gistr (>= 0.0.8.99), servr, shiny,
knitr, rmarkdown, digest, htmltools

Depends: R (>= 4.1.0)
Imports: Rcpp (>= 1.0.6), gtools, LaplacesDemon, dplyr, plyr, tidyr,
ggplot2, latex2exp, reshape2, RColorBrewer
LinkingTo: Rcpp, RcppArmadillo, RcppProgress, rgen
Suggests: rmarkdown, knitr

Depends: R (>= 4.2.0)
Imports: stats, utils, gnorm, optimx, xts (>= 0.10-0), zoo, moments,
parallel, graphics, scales, ggplot2, grid, yaml, methods
Suggests: knitr, testthat, depmixS4, roxygen2, R.rsp, shape

Imports: GUniFrac, vegan, permute, parallel, BiocParallel, matrixStats,
castor, phangorn, modeest

Depends: R (>= 2.10)
Imports: Rcpp, foreach, doParallel, ashr, corrplot, lpSolve, abind,
modeest, matrixStats
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, covr, knitr, rmarkdown, updog (>= 2.0.2),
VariantAnnotation

Depends: R (>= 3.5)
Imports: data.table, foreach, MASS, Rcpp, stats
LinkingTo: Rcpp, RcppArmadillo
Suggests: GA, knitr, rmarkdown, testthat, ggplot2, patchwork, doFuture,
future

Depends: R (>= 3.5.0)
Imports: Rcpp, tdata, Rdpack (>= 0.7), MASS
LinkingTo: BH, Rcpp
Suggests: knitr, testthat, rmarkdown, kableExtra, moments, systemfit

Depends: R (>= 3.5.0)
Imports: R6, leaflet, magrittr, checkmate, shiny, shinyjs
Suggests: covr, testthat, knitr, rmarkdown, shinytest, dplyr,
htmltools, raster, rmapshaper, shinycssloaders

Depends: R (>= 3.1.0)
Imports: base64enc, geojsonsf, htmltools (>= 0.3), htmlwidgets, leaflet
(>= 2.0.1), methods, raster, sf, png
Suggests: clipr, leafgl, lwgeom, mapdeck, plainview, stars

Imports: geojsonsf, htmltools, jsonify, leaflet, sf, grDevices
Suggests: colourvalues, shiny, testthat (>= 2.1.0)