Depends: R (>= 3.5.0)
Imports: dplyr, dynutils (>= 1.0.3), dynwrap, grDevices, ggplot2 (>=
2.0), lmds, MASS, Matrix, mclust, methods, pbapply, pheatmap,
princurve (>= 2.1.4), purrr, ranger, RANN, RColorBrewer,
reshape2, stats, tidyr, TSP
Suggests: anndata, covr, knitr, reticulate, rmarkdown, Seurat,
SingleCellExperiment, testthat (>= 2.1.0)

Imports: glasso, stats, grDevices, graphics
Suggests: lars

Depends: R (>= 3.5.0), ggplot2, ggpubr, stats

Imports: Seurat, dplyr, rdist, energy, stats

Depends: R (>= 3.5.0)
Imports: dplyr, GenomicRanges, magrittr, MASS, matrixStats, mixtools,
nimble, rlang, Rsamtools, tibble, tidyr, utils
Suggests: gplots, IRanges, knitr, readr, rmarkdown, testthat (>= 3.0.0)

Imports: ggplot2, scan (>= 0.57.0), stats, utils, mblm

Depends: R (>= 2.10)
Imports: ggplot2, glmpca, Seurat, magrittr, dplyr, tidyr, purrr,
Matrix, Rdpack, SeuratObject, WGCNA, broom, stats, methods,
matrixStats
Suggests: renv, testthat (>= 3.0.0), vdiffr, rmarkdown, knitr, qpdf

Depends: R (>= 4.0.0)
Suggests: AnnotationDbi, assertthat, AUCell, circlize, cli, cluster,
clusterProfiler, colorspace, ComplexHeatmap, covr, decoupleR,
dplyr (>= 1.1.0), enrichplot, forcats, ggalluvial, ggbeeswarm,
ggdist, ggExtra, ggh4x, ggnewscale, ggplot2 (>= 3.4.0),
ggplotify, ggrastr, ggrepel, ggridges, ggsignif, graphics,
infercnv, knitr, labeling, magrittr, MASS, Matrix, methods,
Nebulosa, org.Hs.eg.db, patchwork, pheatmap, plyr, purrr, qpdf,
RColorBrewer, rjags, rlang, rmarkdown, scales, scattermore,
Seurat, SeuratObject, sf, stringr, svglite, testthat (>=
3.0.0), tibble, tidyr, UCell, viridis, withr

Imports: XML, xml2, rvest, data.table, parallel

Imports: httr, rvest, utils, magrittr, stringr

Depends: R (>= 2.10)
Imports: dplyr, fs, imager, purrr, rlang, stringr, tibble, utils
Suggests: knitr, rmarkdown, spelling, testthat (>= 3.0.0)

Suggests: covr, knitr, rmarkdown, spelling, testthat (>= 3.1.0), withr

Suggests: MASS, RSQLite (>= 0.4-15), oligoClasses (>= 1.1.9), DBI

Depends: R (>= 4.0)
Imports: splatter(>= 1.16.1), S4Vectors(>= 0.30.0),
SummarizedExperiment(>= 1.22.0), SingleCellExperiment(>=
1.14.1), edgeR(>= 3.34.0), methods, stats, mgcv, knitr,
BiocManager, BiocGenerics, Seurat, crayon, fitdistrplus,
checkmate (>= 2.0.0)
Suggests: rmarkdown, testthat (>= 3.0.0)