Depends: R (>= 3.5.0)
Imports: data.table (>= 1.15.0), DBI, RMariaDB, numDeriv, RColorBrewer,
utils, stats, methods, graphics, grDevices, sqldf, dplyr,
tidyr, plotly, tcplfit2, ggplot2, gridExtra, stringr, rlang,
ctxR
Suggests: roxygen2, knitr, prettydoc, rmarkdown, htmlTable, testthat
(>= 3.0.0), reshape2, viridis, kableExtra, colorspace,
magrittr, vdiffr, httptest, rmdformats

Depends: R (>= 3.5.0)
Imports: stats, methods, numDeriv, RColorBrewer, stringr, reshape2,
ggplot2
Suggests: knitr, rmarkdown, stringi, DT, data.table, tcpl, prettydoc,
testthat (>= 3.0.0), here, htmlTable, tidyr, dplyr, gridExtra,
rmdformats

Imports: FNN, Rcpp (>= 0.11.0), igraph, parallel, scales
LinkingTo: BH (>= 1.81.0-1), Rcpp, RcppEigen

Imports: Rcpp, Rdpack, TDAstats, T4cluster, energy, ggplot2, maotai,
stats, utils
LinkingTo: Rcpp, RcppArmadillo

Depends: R (>= 3.5.0)
Imports: parallel, doParallel, foreach, clue, rdist, parallelly,
kernlab, iterators, methods, stats, utils, Rcpp (>= 0.11.0)
LinkingTo: Rcpp
Suggests: rmarkdown, knitr, testthat (>= 3.0.0), TDAstats, reticulate,
igraph

Suggests: testthat (>= 2.0.0), knitr, rmarkdown, covr

Depends: R (>= 3.3.0)
Suggests: knitr, rmarkdown, testthat, vdiffr (>= 0.2)

Imports: Rcpp (>= 1.0.9), TDA, microbenchmark

Suggests: devtools, knitr, lintr, MASS, rmarkdown, ROI, roxygen2,
styler (>= 1.10.2), testthat (>= 3.0.0), tinytex, V8

Suggests: readr (>= 2.0.0), testthat (>= 3.0.4)

Imports: Ecume, mathjaxr, Rdpack(>= 1.0.0), readr (>= 2.0.0), rmarkdown
(>= 2.0.0), sf (>= 1.0.0)

Imports: RColorBrewer, grDevices, stats, utils

Suggests: tuneR, alluvial, covr, testthat, devtools, GA,
sonicscrewdriver

Suggests: tkrplot, lattice, MASS, rgl, tcltk, tcltk2, png, ggplot2,
logspline, spData, sf
Enhances: manipulate, R2wd

Depends: R (>= 4.0), shiny (>= 1.7.0), teal.data (>= 0.4.0), teal.slice
(>= 0.5.0)
Imports: checkmate (>= 2.1.0), jsonlite, lifecycle (>= 0.2.0), logger
(>= 0.2.0), magrittr (>= 1.5), methods, rlang (>= 1.0.0),
shinyjs, stats, teal.code (>= 0.5.0), teal.logger (>= 0.1.1),
teal.reporter (>= 0.2.0), teal.widgets (>= 0.4.0), utils
Suggests: bslib, knitr (>= 1.42), MultiAssayExperiment, R6, rmarkdown
(>= 2.19), shinyvalidate, testthat (>= 3.1.5), withr (>=
2.1.0), yaml (>= 1.1.0)