Imports: Rcpp (>= 0.12.2),igraph,parmigene,infotheo,dplyr, Rtsne,
ggplot2, ggrepel

Depends: tools (>= 3.4.0)
Imports: httr, utils, jsonlite, pander, formattable, stringr, crayon,
lubridate, tidyr, textutils, htmlTable, clipr, shiny,
reactable, shinyjs, shinybusy

Depends: R (>= 3.3.0)
Imports: callr, checkmate, codetools, crayon, cyclocomp, desc, fakemake
(>= 1.10.1), fritools (>= 3.4.0), fs, gert, httr, pkgbuild,
pkgload, rcmdcheck, remotes, rhub, rprojroot, tinytest, tools,
whisker, whoami
Suggests: cleanr, covr, devtools, digest, document, knitr, lintr,
rasciidoc (>= 3.0.1), rmarkdown, roxygen2, RUnit, stats,
spelling, testthat, usethis, withr

Imports: cranlogs, curl, data.table (>= 1.12.2), ggplot2, ISOcodes,
memoise, pkgsearch, R.utils, RCurl, rlang, rversions, sugrrants

Suggests: ggiraph (>= 0.8.4), ggplot2, knitr, rmarkdown, lpSolve

Imports: fs, cli, usethis, jsonlite, roxygen2, rprojroot, rstudioapi,
assertthat, htmlwidgets
Suggests: testthat, covr, golem

Depends: survival
Imports: stats, graphics, WriteXLS (>= 2.3.0)

Depends: ade4, pROC
Imports: MASS, parallel, doParallel, foreach, FactoMineR

Suggests: devtools, httr, knitr, mockery, rmarkdown, testthat (>=
3.0.0)

Suggests: BiocManager, knitr, lattice, testthat (>= 0.9.0), XML

Imports: Rcpp (>= 0.11.4), VineCopula (>= 2.0.5), numDeriv, ggplot2(>=
2.0.0), gridExtra, methods

Depends: R (>= 3.5.0)
Imports: curl, memoise, jsonlite, xml2, stringi
Suggests: remotes, renv, withr, pkgsearch, mockery, testthat (>=
3.0.0), knitr, rmarkdown

Imports: Biostrings (>= 2.48.0), dplyr, GenomicAlignments (>= 1.18.1),
GenomicRanges, IRanges, logger, read.gb (>= 2.2), RCircos (>=
1.2.0), grDevices, stats, utils, tidyr, R6

Depends: R (>= 3.0.0)
Imports: Rcpp, dplyr (>= 1.0.0), lubridate, rlang
LinkingTo: Rcpp
Suggests: ggplot2, testthat, knitr, rmarkdown, lazyeval, tidyr,
data.table

Imports: Rcpp (>= 0.11.3) , grDevices, graphics, stats, RColorBrewer,
VGAM, MASS, magicaxis, networkDynamic, network, plyr, igraph,
mapproj, knitr, methods, ggplot2

Suggests: testthat, covr, knitr, ggpubr, rmarkdown, microbenchmark