Quantification of variation in organismal color patterns as
    obtained from image data. Patternize defines homology between pattern positions
    across images either through fixed landmarks or image registration. Pattern
    identification is performed by categorizing the distribution of colors using RGB
    thresholds or image segmentation.

Creates aesthetically pleasing and informative pie charts, ring charts, bar charts and box plots with colors, patterns, and images.

A modeling tool dedicated to biological network modeling (Bertrand and others 2020, <doi:10.1093/bioinformatics/btaa855>). It allows for single or joint modeling of, for instance, genes and proteins. It starts with the selection of the actors that will be the used in the reverse engineering upcoming step. An actor can be included in that selection based on its differential measurement (for instance gene expression or protein abundance) or on its time course profile. Wrappers for actors clustering functions and cluster analysis are provided. It also allows reverse engineering of biological networks taking into account the observed time course patterns of the actors. Many inference functions are provided and dedicated to get specific features for the inferred network such as sparsity, robust links, high confidence links or stable through resampling links. Some simulation and prediction tools are also available for cascade networks (Jung and others 2014, <doi:10.1093/bioinformatics/btt705>). Example of use with microarray or RNA-Seq data are provided.

A cohesive framework for the spectral and spatial analysis of 
    colour described in Maia, Eliason, Bitton, Doucet & Shawkey (2013) 
    <doi:10.1111/2041-210X.12069> and Maia, Gruson, Endler & White (2019)
    <doi:10.1111/2041-210X.13174>.

Functions to process, format and store ActiGraph GT1M and GT3X accelerometer data.

Interface to Amazon Web Services <https://aws.amazon.com>,
    including storage, database, and compute services, such as 'Simple
    Storage Service' ('S3'), 'DynamoDB' 'NoSQL' database, and 'Lambda'
    functions-as-a-service.