Modelling interacting microbial populations - example applications
    include human gut microbiota, rumen microbiota and phytoplankton. Solves a
    system of ordinary differential equations to simulate microbial growth and
    resource uptake over time. This version contains network visualisation functions.

Clinical sequencing of tumor is usually performed on formalin-fixed
    and paraffin-embedded samples and have many sequencing errors. We found that
    the majority of these errors are detected in chimeric read caused by
    single-strand DNA with micro-homology. Our filtering pipeline focuses on the
    uneven distribution of the artifacts in each read and removes such errors in
    formalin-fixed and paraffin-embedded samples without over-eliminating the
    true mutations detected in fresh frozen samples.

Basic functions for microbial sequence data analysis. The idea is to use generic R data structures as much as possible, making R data wrangling possible also for sequence data.

Discrete event simulation using both R and C++ (Karlsson et al 2016; <doi:10.1109/eScience.2016.7870915>). The C++ code is adapted from the SSIM library <https://www.inf.usi.ch/carzaniga/ssim/>, allowing for event-oriented simulation. The code includes a SummaryReport class for reporting events and costs by age and other covariates. The C++ code is available as a static library for linking to other packages. A priority queue implementation is given in C++ together with an S3 closure and a reference class implementation. Finally, some tools are provided for cost-effectiveness analysis.

An interface to the 'Microsoft 365' (formerly known as 'Office 365') suite of cloud services, building on the framework supplied by the 'AzureGraph' package. Enables access from R to data stored in 'Teams', 'SharePoint Online' and 'OneDrive', including the ability to list drive folder contents, upload and download files, send messages, and retrieve data lists. Also provides a full-featured 'Outlook' email client, with the ability to send emails and manage emails and mail folders.