Suggests: DT (>= 0.5), stevedore, tinytest, covr (>= 3.0.0), DBItest

Depends: R (>= 2.14.0)
Imports: ca, cluster, colorspace, foreach, gclus, grDevices, grid,
MASS, qap, registry, stats, TSP, vegan
Suggests: dbscan, DendSer, dendextend, doParallel, GA, ggplot2, keras,
Rtsne, scales, smacof, tensorflow, testthat, umap

Depends: R (>= 4.1.0)
Imports: doParallel, dplyr (>= 1.1.1), foreach, ggplot2, ggpubr,
lifecycle, magrittr, mixtools, Rcpp, rlang, rngtools, scales,
stats, tibble, tidyr, utils, cli
LinkingTo: Rcpp
Suggests: parallel, knitr, rmarkdown, tidyverse, fs, testthat (>=
3.0.0), readr, bookdown, ggbeeswarm, DT

Imports: deSolve, dplyr, ggplot2, locfit, magrittr, methods, mgcv,
mixdist, patchwork, Rcpp (>= 0.12.0), RcppParallel (>= 5.0.1),
rstan (>= 2.18.1), rstantools (>= 2.4.0), boot, stats4
Suggests: covr, knitr, rmarkdown, bookdown, testthat (>= 3.0.0)

Depends: R (>= 3.2.0)
Imports: ordinal (>= 2016-12-12), crayon, stats
Suggests: covr, testthat, VGAM (>= 1.1-4)

Depends: R (>= 3.5.0), Matrix, truncnorm, splines
Suggests: testthat, knitr, rmarkdown, Hmisc

Depends: R (>= 3.0.0)
Imports: mime (>= 0.2), httpuv (>= 1.5.2), xfun (>= 0.48), jsonlite
Suggests: tools, later, rstudioapi, knitr (>= 1.9), rmarkdown

Imports: combinat, Matrix, Rdpack, stats
Suggests: qgraph

Depends: R (>= 2.10)
Imports: graphics, methods, rlang, stats, terra, utils
Suggests: kableExtra, knitr, rmarkdown, testthat (>= 3.0.0)

Suggests: callr, covr, mockery, reticulate, rmarkdown, testthat, withr

Imports: stats, utils, methods, parallel, generics (>= 0.1.2)

Depends: QCA, admisc, methods, ggplot2, ggrepel, stargazer, R (>=
3.5.0)

Imports: cli, dplyr, glue, googledrive, jsonlite, rappdirs, tibble,
yesno

Depends: R (>= 4.0.0), methods, SeuratObject (>= 5.0.2)
Imports: cluster, cowplot, fastDummies, fitdistrplus, future,
future.apply, generics (>= 0.1.3), ggplot2 (>= 3.3.0), ggrepel,
ggridges, graphics, grDevices, grid, httr, ica, igraph, irlba,
jsonlite, KernSmooth, leiden (>= 0.3.1), lifecycle, lmtest,
MASS, Matrix (>= 1.5-0), matrixStats, miniUI, patchwork,
pbapply, plotly (>= 4.9.0), png, progressr, purrr, RANN,
RColorBrewer, Rcpp (>= 1.0.7), RcppAnnoy (>= 0.0.18), RcppHNSW,
reticulate, rlang, ROCR, RSpectra, Rtsne, scales, scattermore
(>= 1.2), sctransform (>= 0.4.1), shiny, spatstat.explore,
spatstat.geom, stats, tibble, tools, utils, uwot (>= 0.1.10)
LinkingTo: Rcpp (>= 0.11.0), RcppEigen, RcppProgress
Suggests: ape, arrow, BPCells, rsvd, testthat, hdf5r, S4Vectors,
SummarizedExperiment, SingleCellExperiment, MAST, DESeq2,
BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges,
rtracklayer, Rfast2, monocle, Biobase, VGAM, limma, metap,
enrichR, mixtools, ggrastr, data.table, R.utils, presto,
DelayedArray, harmony