CRAN Package Check Results for Maintainer ‘Dörte Wittenburg <wittenburg at fbn-dummerstorf.de>’

Last updated on 2026-02-15 07:51:26 CET.

Package	ERROR	OK
hscovar	1	13
hsrecombi		14

Package hscovar

Current CRAN status: ERROR: 1, OK: 13

Version: 0.4.2
Check: examples
Result: ERROR Running examples in ‘hscovar-Ex.R’ failed The error most likely occurred in: > ### Name: tagSNP > ### Title: tagSNP > ### Aliases: tagSNP > > ### ** Examples > > ### 1: INPUT DATA > data(testdata) > ### 2: COVARIANCE/CORRELATION MATRIX > corrmat <- CovMat(matLD, H.sire, 100, pos.chr, corr = TRUE) *** caught segfault *** address 0x110, cause 'invalid permissions' Traceback: 1: lapply(X = S, FUN = FUN, ...) 2: doTryCatch(return(expr), name, parentenv, handler) 3: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 4: tryCatchList(expr, classes, parentenv, handlers) 5: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 6: try(lapply(X = S, FUN = FUN, ...), silent = TRUE) 7: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE)) 8: FUN(X[[i]], ...) 9: lapply(seq_len(cores), inner.do) 10: mclapply(e1, tcrossprod) 11: CovarMatrix(expectationMat, linkMat, linkSire, Ns) 12: CovMat(matLD, H.sire, 100, pos.chr, corr = TRUE) An irrecoverable exception occurred. R is aborting now ... Warning in mclapply(e1, tcrossprod) : scheduled core 1 did not deliver a result, all values of the job will be affected 0 SNPs have non-zero variance -> output matrix has reduced dimensions. Error in `rownames<-`(`*tmp*`, value = 1:p) : attempt to set 'rownames' on an object with no dimensions Calls: CovMat -> rownames<- Execution halted Flavor: r-devel-macos-arm64

Package hsrecombi

Current CRAN status: OK: 14