CRAN Package Check Results for Maintainer ‘Daniel Sussman <sussman at bu.edu>’

Last updated on 2026-02-15 07:51:24 CET.

Package	ERROR	OK
iGraphMatch	1	13

Package iGraphMatch

Current CRAN status: ERROR: 1, OK: 13

Version: 2.0.5
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [11s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(iGraphMatch) Thanks for using iGraphMatch! We'd love to get feedback on what you like, what you don't like, and how you are using the package. See ?iGraphMatch for contact information. > > test_check("iGraphMatch") Sparse part 10 x 10 sparse Matrix of class "dgCMatrix" [1,] . . -0.77 . 1.4000 -0.15 . -0.32 -0.0076 0.55 [2,] -0.46 . -1.10 1.30 0.3400 . -0.160 . . -1.20 [3,] -1.10 . . . 0.0069 . . . . 0.56 [4,] -1.10 -1.10 . . . -0.37 . . 1.6000 . [5,] -0.28 . . . . . . . -0.1800 . [6,] -1.40 -0.97 -0.17 . . -1.00 -0.035 -0.19 -1.3000 2.50 [7,] . 0.85 . . -0.6700 -0.17 0.660 -0.72 . . [8,] -1.40 . -0.47 -0.99 1.8000 0.70 . -0.58 . . [9,] -0.86 . 0.26 . 0.6500 . . -1.80 . 2.10 [10,] . . . 1.60 . -0.40 -0.500 1.40 -0.5200 . plus left factor 10 x 3 Matrix of class "dgeMatrix" [,1] [,2] [,3] [1,] 0.11613577 0.3100942 0.9830440 [2,] 0.30302180 0.7425694 0.6392046 [3,] 0.47880269 0.6389113 0.6607546 [4,] 0.34483055 0.9925160 0.5283594 [5,] 0.60071414 0.1282698 0.3174938 [6,] 0.07608332 0.8832396 0.7678555 [7,] 0.95599261 0.8100834 0.5263085 [8,] 0.02220682 0.8218512 0.7323019 [9,] 0.84171063 0.8347027 0.3076657 [10,] 0.63244245 0.7327322 0.4041733 times right factor transpose 10 x 3 Matrix of class "dgeMatrix" [,1] [,2] [,3] [1,] 0.2044024 0.47922247 0.5089206 [2,] 0.9856331 0.85031192 0.4944386 [3,] 0.5663108 0.42233068 0.7970529 [4,] 0.2803751 0.03139212 0.5669589 [5,] 0.1850557 0.25814665 0.1066968 [6,] 0.7580614 0.33484473 0.8076484 [7,] 0.5667813 0.13354967 0.5671121 [8,] 0.9321736 0.49954639 0.2122409 [9,] 0.6386933 0.80213563 0.7495793 [10,] 0.7007481 0.33715324 0.3072184 Sparse part 10 x 10 sparse Matrix of class "dgCMatrix" [1,] . . -0.77 . 1.4000 -0.15 . -0.32 -0.0076 0.55 [2,] -0.46 . -1.10 1.30 0.3400 . -0.160 . . -1.20 [3,] -1.10 . . . 0.0069 . . . . 0.56 [4,] -1.10 -1.10 . . . -0.37 . . 1.6000 . [5,] -0.28 . . . . . . . -0.1800 . [6,] -1.40 -0.97 -0.17 . . -1.00 -0.035 -0.19 -1.3000 2.50 [7,] . 0.85 . . -0.6700 -0.17 0.660 -0.72 . . [8,] -1.40 . -0.47 -0.99 1.8000 0.70 . -0.58 . . [9,] -0.86 . 0.26 . 0.6500 . . -1.80 . 2.10 [10,] . . . 1.60 . -0.40 -0.500 1.40 -0.5200 . plus left factor 10 x 3 Matrix of class "dgeMatrix" [,1] [,2] [,3] [1,] 0.11613577 0.3100942 0.9830440 [2,] 0.30302180 0.7425694 0.6392046 [3,] 0.47880269 0.6389113 0.6607546 [4,] 0.34483055 0.9925160 0.5283594 [5,] 0.60071414 0.1282698 0.3174938 [6,] 0.07608332 0.8832396 0.7678555 [7,] 0.95599261 0.8100834 0.5263085 [8,] 0.02220682 0.8218512 0.7323019 [9,] 0.84171063 0.8347027 0.3076657 [10,] 0.63244245 0.7327322 0.4041733 times right factor transpose 10 x 3 Matrix of class "dgeMatrix" [,1] [,2] [,3] [1,] 0.2044024 0.47922247 0.5089206 [2,] 0.9856331 0.85031192 0.4944386 [3,] 0.5663108 0.42233068 0.7970529 [4,] 0.2803751 0.03139212 0.5669589 [5,] 0.1850557 0.25814665 0.1066968 [6,] 0.7580614 0.33484473 0.8076484 [7,] 0.5667813 0.13354967 0.5671121 [8,] 0.9321736 0.49954639 0.2122409 [9,] 0.6386933 0.80213563 0.7495793 [10,] 0.7007481 0.33715324 0.3072184 splrMatrix Dimension: 10 10 Lower rank matrix is rank: 3 *** caught segfault *** address 0x1, cause 'invalid permissions' Traceback: 1: eigen(A[[ch]]) 2: graph_match_Umeyama(A, B, seeds, similarity) 3: gm(A, B, seeds, startm, method = "Umeyama") 4: eval(code, test_env) 5: eval(code, test_env) 6: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt) 7: doTryCatch(return(expr), name, parentenv, handler) 8: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9: tryCatchList(expr, classes, parentenv, handlers) 10: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal) 11: doWithOneRestart(return(expr), restart) 12: withOneRestart(expr, restarts[[1L]]) 13: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { }) 14: test_code(code, parent.frame()) 15: test_that("matching correspondence between graph1 and graph2 for directed graphs", { tt <- gm(A, B, seeds, startm, method = "Umeyama") expect_snapshot_output(print(tt)) expect_snapshot_output(print(round(as.matrix(tt$soft), 4))) }) 16: eval(code, test_env) 17: eval(code, test_env) 18: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt) 19: doTryCatch(return(expr), name, parentenv, handler) 20: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 21: tryCatchList(expr, classes, parentenv, handlers) 22: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal) 23: doWithOneRestart(return(expr), restart) 24: withOneRestart(expr, restarts[[1L]]) 25: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { }) 26: test_code(code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new()) 27: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call) 28: FUN(X[[i]], ...) 29: lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call) 30: doTryCatch(return(expr), name, parentenv, handler) 31: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 32: tryCatchList(expr, classes, parentenv, handlers) 33: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) 34: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call)) 35: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, shuffle = shuffle, error_call = error_call) 36: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel, shuffle = shuffle) 37: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 38: test_check("iGraphMatch") An irrecoverable exception occurred. R is aborting now ... Flavor: r-devel-macos-arm64