CRAN Package Check Results for Maintainer ‘Steve Rozen <steverozen at gmail.com>’

Last updated on 2025-04-12 20:52:25 CEST.

Package	NOTE	OK
ICAMS	9	5

Package ICAMS

Current CRAN status: NOTE: 9, OK: 5

Version: 2.3.12
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: AnnotateDBSVCF.Rd: BSgenome AnnotateSBSVCF.Rd: BSgenome GeneExpressionData.Rd: data.table ICAMS.Rd: BSgenome MutectVCFFilesToCatalog.Rd: BSgenome MutectVCFFilesToCatalogAndPlotToPdf.Rd: BSgenome MutectVCFFilesToZipFile.Rd: BSgenome NormalizeGenomeArg.Rd: BSgenome PlotTransBiasGeneExp.Rd: data.table PlotTransBiasGeneExpToPdf.Rd: data.table StrelkaSBSVCFFilesToCatalog.Rd: BSgenome StrelkaSBSVCFFilesToCatalogAndPlotToPdf.Rd: BSgenome StrelkaSBSVCFFilesToZipFile.Rd: BSgenome VCFsToCatalogs.Rd: BSgenome VCFsToCatalogsAndPlotToPdf.Rd: BSgenome VCFsToDBSCatalogs.Rd: BSgenome VCFsToSBSCatalogs.Rd: BSgenome VCFsToZipFile.Rd: BSgenome revc.Rd: reverseComplement Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 2.3.12
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BSgenome.Hsapiens.1000genomes.hs37d5', 'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10' Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 2.3.12
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BSgenome.Hsapiens.1000genomes.hs37d5', 'BSgenome.Mmusculus.UCSC.mm10' Flavor: r-oldrel-windows-x86_64