CRAN Package Check Results for Maintainer ‘Stephen Abrams <stephen.abrams at gmail.com>’

Last updated on 2025-12-28 01:49:21 CET.

Package	ERROR	OK
spect	1	12

Package spect

Current CRAN status: ERROR: 1, OK: 12

Version: 1.0
Check: tests
Result: ERROR Running 'testthat.R' [31s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(spect) Loading required package: futile.logger Loading required package: dplyr Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union > > test_check("spect") Loading required package: ggplot2 Loading required package: lattice Saving _problems/test-evaluate_model-33.R [ FAIL 1 | WARN 73 | SKIP 0 | PASS 29 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-evaluate_model.R:30:3'): evaluate_model throws an error for prediction times outside of the data window ── Expected `... <- NULL` not to throw any errors. Actually got a <simpleError> with message: attempt access index 10/10 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-evaluate_model.R:30:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─spect::evaluate_model(...) 8. ├─riskRegression::Score(...) 9. └─riskRegression::Score.list(...) 10. └─riskRegression:::computePerformance(...) 11. ├─base::do.call(paste(m, response.type, sep = "."), input) 12. └─riskRegression:::Brier.survival(...) 13. ├─...[] 14. └─data.table:::`[.data.table`(...) [ FAIL 1 | WARN 73 | SKIP 0 | PASS 29 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'create_synthetic_data.Rmd' using rmarkdown --- finished re-building 'create_synthetic_data.Rmd' --- re-building 'modeling_with_binary_classifiers.Rmd' using rmarkdown Quitting from modeling_with_binary_classifiers.Rmd:96-100 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 10/10 in VECTOR_ELT --- Backtrace: ▆ 1. └─spect::evaluate_model(result, prediction_times) 2. ├─riskRegression::Score(...) 3. └─riskRegression::Score.list(...) 4. └─riskRegression:::computePerformance(...) 5. ├─base::do.call(paste(m, response.type, sep = "."), input) 6. └─riskRegression:::Brier.survival(...) 7. ├─...[] 8. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'modeling_with_binary_classifiers.Rmd' failed with diagnostics: attempt access index 10/10 in VECTOR_ELT --- failed re-building 'modeling_with_binary_classifiers.Rmd' --- re-building 'training_synthetic_data.Rmd' using rmarkdown --- finished re-building 'training_synthetic_data.Rmd' SUMMARY: processing the following file failed: 'modeling_with_binary_classifiers.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64