Last updated on 2026-02-15 11:50:22 CET.
| Package | ERROR | NOTE |
|---|---|---|
| Tendril | 9 | 5 |
Current CRAN status: ERROR: 9, NOTE: 5
Version: 2.0.4
Check: Rd files
Result: NOTE
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.0.4
Check: examples
Result: ERROR
Running examples in ‘Tendril-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
>
> ### ** Examples
>
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...)
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(Tendril)
>
> test_check("Tendril")
Saving _problems/test_plot_timeseries-21.R
Saving _problems/test_tendrilData-251.R
Saving _problems/test_tendrilData-337.R
Saving _problems/test_tendrilData-365.R
Saving _problems/test_tendrilData-395.R
Saving _problems/test_tendrilData-426.R
Saving _problems/test_tendrilData-458.R
Saving _problems/test_tendrilData-492.R
Saving _problems/test_tendrilData-522.R
Saving _problems/test_tendrilPerm-25.R
Saving _problems/test_tendrilPerm-137.R
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_plot_timeseries.R:8:5'): Creation of plot timeseries ───────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test_plot_timeseries.R:7:3
2. │ └─base::withCallingHandlers(...)
3. └─Tendril::Tendril(...) at test_plot_timeseries.R:8:5
4. └─Tendril:::dataSetup(...)
5. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
6. └─dplyr:::lazy_defunct("rename", hint = FALSE)
7. └─lifecycle::deprecate_stop(...)
8. └─lifecycle:::deprecate_stop0(msg)
9. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:238:5'): tendril_result_correct ──────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:238:5
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:324:3'): tendril_result_correct_filter_double_events ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:324:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:356:3'): tendril_result_no_SubjList_supplied ─────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:356:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:384:3'): tendril_result_no_SubjList_supplied_single_rotation_factor ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:384:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:413:3'): tendril_proportional_rotation_factor ────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:413:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:445:3'): tendril_error_event_after_dropout ───────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:445:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:478:3'): tendril_check_correct_imbalance_and_variable_rotation ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:478:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:509:3'): tendril_check_for_presence_of_term ──────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:509:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:14:5'): input_perm_valid ─────────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:13:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:14:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:126:5'): output_perm_valid ───────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:125:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:126:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘TendrilUsage.Rmd’ using rmarkdown
Quitting from TendrilUsage.Rmd:28-51 [example_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
---
Backtrace:
▆
1. └─Tendril::Tendril(...)
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
`rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
--- failed re-building ‘TendrilUsage.Rmd’
SUMMARY: processing the following file failed:
‘TendrilUsage.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(Tendril)
>
> test_check("Tendril")
Saving _problems/test_plot_timeseries-21.R
Saving _problems/test_tendrilData-251.R
Saving _problems/test_tendrilData-337.R
Saving _problems/test_tendrilData-365.R
Saving _problems/test_tendrilData-395.R
Saving _problems/test_tendrilData-426.R
Saving _problems/test_tendrilData-458.R
Saving _problems/test_tendrilData-492.R
Saving _problems/test_tendrilData-522.R
Saving _problems/test_tendrilPerm-25.R
Saving _problems/test_tendrilPerm-137.R
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_plot_timeseries.R:8:5'): Creation of plot timeseries ───────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test_plot_timeseries.R:7:3
2. │ └─base::withCallingHandlers(...)
3. └─Tendril::Tendril(...) at test_plot_timeseries.R:8:5
4. └─Tendril:::dataSetup(...)
5. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
6. └─dplyr:::lazy_defunct("rename", hint = FALSE)
7. └─lifecycle::deprecate_stop(...)
8. └─lifecycle:::deprecate_stop0(msg)
9. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:238:5'): tendril_result_correct ──────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:238:5
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:324:3'): tendril_result_correct_filter_double_events ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:324:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:356:3'): tendril_result_no_SubjList_supplied ─────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:356:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:384:3'): tendril_result_no_SubjList_supplied_single_rotation_factor ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:384:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:413:3'): tendril_proportional_rotation_factor ────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:413:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:445:3'): tendril_error_event_after_dropout ───────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:445:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:478:3'): tendril_check_correct_imbalance_and_variable_rotation ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:478:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:509:3'): tendril_check_for_presence_of_term ──────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:509:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:14:5'): input_perm_valid ─────────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:13:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:14:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:126:5'): output_perm_valid ───────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:125:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:126:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.4
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘graphics’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.0.4
Check: examples
Result: ERROR
Running examples in ‘Tendril-Ex.R’ failed
The error most likely occurred in:
> ### Name: Tendril
> ### Title: Tendril
> ### Aliases: Tendril
>
> ### ** Examples
>
> data <- Tendril(mydata = TendrilData,
+ rotations = Rotations,
+ AEfreqThreshold=9,
+ Tag = "Comment",
+ Treatments = c("placebo", "active"),
+ Unique.Subject.Identifier = "subjid",
+ Terms = "ae",
+ Treat = "treatment",
+ StartDay = "day",
+ SubjList = SubjList,
+ SubjList.subject = "subjid",
+ SubjList.treatment = "treatment"
+ )
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...)
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 2.0.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(Tendril)
>
> test_check("Tendril")
Saving _problems/test_plot_timeseries-21.R
Saving _problems/test_tendrilData-251.R
Saving _problems/test_tendrilData-337.R
Saving _problems/test_tendrilData-365.R
Saving _problems/test_tendrilData-395.R
Saving _problems/test_tendrilData-426.R
Saving _problems/test_tendrilData-458.R
Saving _problems/test_tendrilData-492.R
Saving _problems/test_tendrilData-522.R
Saving _problems/test_tendrilPerm-25.R
Saving _problems/test_tendrilPerm-137.R
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_plot_timeseries.R:8:5'): Creation of plot timeseries ───────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test_plot_timeseries.R:7:3
2. │ └─base::withCallingHandlers(...)
3. └─Tendril::Tendril(...) at test_plot_timeseries.R:8:5
4. └─Tendril:::dataSetup(...)
5. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
6. └─dplyr:::lazy_defunct("rename", hint = FALSE)
7. └─lifecycle::deprecate_stop(...)
8. └─lifecycle:::deprecate_stop0(msg)
9. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:238:5'): tendril_result_correct ──────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:238:5
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:324:3'): tendril_result_correct_filter_double_events ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:324:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:356:3'): tendril_result_no_SubjList_supplied ─────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:356:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:384:3'): tendril_result_no_SubjList_supplied_single_rotation_factor ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:384:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:413:3'): tendril_proportional_rotation_factor ────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:413:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:445:3'): tendril_error_event_after_dropout ───────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:445:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:478:3'): tendril_check_correct_imbalance_and_variable_rotation ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:478:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:509:3'): tendril_check_for_presence_of_term ──────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:509:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:14:5'): input_perm_valid ─────────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:13:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:14:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:126:5'): output_perm_valid ───────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:125:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:126:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘TendrilUsage.Rmd’ using rmarkdown
Quitting from TendrilUsage.Rmd:28-51 [example_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
---
Backtrace:
▆
1. └─Tendril::Tendril(...)
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'TendrilUsage.Rmd' failed with diagnostics:
`rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
--- failed re-building ‘TendrilUsage.Rmd’
SUMMARY: processing the following file failed:
‘TendrilUsage.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 2.0.4
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(Tendril)
>
> test_check("Tendril")
Saving _problems/test_plot_timeseries-21.R
Saving _problems/test_tendrilData-251.R
Saving _problems/test_tendrilData-337.R
Saving _problems/test_tendrilData-365.R
Saving _problems/test_tendrilData-395.R
Saving _problems/test_tendrilData-426.R
Saving _problems/test_tendrilData-458.R
Saving _problems/test_tendrilData-492.R
Saving _problems/test_tendrilData-522.R
Saving _problems/test_tendrilPerm-25.R
Saving _problems/test_tendrilPerm-137.R
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_plot_timeseries.R:8:5'): Creation of plot timeseries ───────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test_plot_timeseries.R:7:3
2. │ └─base::withCallingHandlers(...)
3. └─Tendril::Tendril(...) at test_plot_timeseries.R:8:5
4. └─Tendril:::dataSetup(...)
5. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
6. └─dplyr:::lazy_defunct("rename", hint = FALSE)
7. └─lifecycle::deprecate_stop(...)
8. └─lifecycle:::deprecate_stop0(msg)
9. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:238:5'): tendril_result_correct ──────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:238:5
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:324:3'): tendril_result_correct_filter_double_events ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:324:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:356:3'): tendril_result_no_SubjList_supplied ─────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:356:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:384:3'): tendril_result_no_SubjList_supplied_single_rotation_factor ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:384:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:413:3'): tendril_proportional_rotation_factor ────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:413:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:445:3'): tendril_error_event_after_dropout ───────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:445:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:478:3'): tendril_check_correct_imbalance_and_variable_rotation ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:478:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:509:3'): tendril_check_for_presence_of_term ──────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:509:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:14:5'): input_perm_valid ─────────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:13:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:14:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:126:5'): output_perm_valid ───────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:125:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:126:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.0.4
Check: tests
Result: ERROR
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(Tendril)
>
> test_check("Tendril")
Saving _problems/test_plot_timeseries-21.R
Saving _problems/test_tendrilData-251.R
Saving _problems/test_tendrilData-337.R
Saving _problems/test_tendrilData-365.R
Saving _problems/test_tendrilData-395.R
Saving _problems/test_tendrilData-426.R
Saving _problems/test_tendrilData-458.R
Saving _problems/test_tendrilData-492.R
Saving _problems/test_tendrilData-522.R
Saving _problems/test_tendrilPerm-25.R
Saving _problems/test_tendrilPerm-137.R
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_plot_timeseries.R:8:5'): Creation of plot timeseries ───────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test_plot_timeseries.R:7:3
2. │ └─base::withCallingHandlers(...)
3. └─Tendril::Tendril(...) at test_plot_timeseries.R:8:5
4. └─Tendril:::dataSetup(...)
5. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
6. └─dplyr:::lazy_defunct("rename", hint = FALSE)
7. └─lifecycle::deprecate_stop(...)
8. └─lifecycle:::deprecate_stop0(msg)
9. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:238:5'): tendril_result_correct ──────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:238:5
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:324:3'): tendril_result_correct_filter_double_events ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:324:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:356:3'): tendril_result_no_SubjList_supplied ─────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:356:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:384:3'): tendril_result_no_SubjList_supplied_single_rotation_factor ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:384:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:413:3'): tendril_proportional_rotation_factor ────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:413:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:445:3'): tendril_error_event_after_dropout ───────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:445:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:478:3'): tendril_check_correct_imbalance_and_variable_rotation ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:478:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:509:3'): tendril_check_for_presence_of_term ──────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:509:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:14:5'): input_perm_valid ─────────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:13:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:14:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:126:5'): output_perm_valid ───────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:125:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:126:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2.0.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(Tendril)
>
> test_check("Tendril")
Saving _problems/test_plot_timeseries-21.R
Saving _problems/test_tendrilData-251.R
Saving _problems/test_tendrilData-337.R
Saving _problems/test_tendrilData-365.R
Saving _problems/test_tendrilData-395.R
Saving _problems/test_tendrilData-426.R
Saving _problems/test_tendrilData-458.R
Saving _problems/test_tendrilData-492.R
Saving _problems/test_tendrilData-522.R
Saving _problems/test_tendrilPerm-25.R
Saving _problems/test_tendrilPerm-137.R
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_plot_timeseries.R:8:5'): Creation of plot timeseries ───────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test_plot_timeseries.R:7:3
2. │ └─base::withCallingHandlers(...)
3. └─Tendril::Tendril(...) at test_plot_timeseries.R:8:5
4. └─Tendril:::dataSetup(...)
5. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
6. └─dplyr:::lazy_defunct("rename", hint = FALSE)
7. └─lifecycle::deprecate_stop(...)
8. └─lifecycle:::deprecate_stop0(msg)
9. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:238:5'): tendril_result_correct ──────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:238:5
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:324:3'): tendril_result_correct_filter_double_events ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:324:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:356:3'): tendril_result_no_SubjList_supplied ─────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:356:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:384:3'): tendril_result_no_SubjList_supplied_single_rotation_factor ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:384:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:413:3'): tendril_proportional_rotation_factor ────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:413:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:445:3'): tendril_error_event_after_dropout ───────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:445:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:478:3'): tendril_check_correct_imbalance_and_variable_rotation ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:478:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:509:3'): tendril_check_for_presence_of_term ──────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:509:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:14:5'): input_perm_valid ─────────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:13:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:14:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:126:5'): output_perm_valid ───────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:125:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:126:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0.4
Check: tests
Result: ERROR
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(Tendril)
>
> test_check("Tendril")
Saving _problems/test_plot_timeseries-21.R
Saving _problems/test_tendrilData-251.R
Saving _problems/test_tendrilData-337.R
Saving _problems/test_tendrilData-365.R
Saving _problems/test_tendrilData-395.R
Saving _problems/test_tendrilData-426.R
Saving _problems/test_tendrilData-458.R
Saving _problems/test_tendrilData-492.R
Saving _problems/test_tendrilData-522.R
Saving _problems/test_tendrilPerm-25.R
Saving _problems/test_tendrilPerm-137.R
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_plot_timeseries.R:8:5'): Creation of plot timeseries ───────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test_plot_timeseries.R:7:3
2. │ └─base::withCallingHandlers(...)
3. └─Tendril::Tendril(...) at test_plot_timeseries.R:8:5
4. └─Tendril:::dataSetup(...)
5. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
6. └─dplyr:::lazy_defunct("rename", hint = FALSE)
7. └─lifecycle::deprecate_stop(...)
8. └─lifecycle:::deprecate_stop0(msg)
9. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:238:5'): tendril_result_correct ──────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:238:5
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:324:3'): tendril_result_correct_filter_double_events ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:324:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:356:3'): tendril_result_no_SubjList_supplied ─────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:356:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:384:3'): tendril_result_no_SubjList_supplied_single_rotation_factor ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:384:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:413:3'): tendril_proportional_rotation_factor ────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:413:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:445:3'): tendril_error_event_after_dropout ───────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:445:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:478:3'): tendril_check_correct_imbalance_and_variable_rotation ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:478:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:509:3'): tendril_check_for_presence_of_term ──────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:509:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:14:5'): input_perm_valid ─────────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:13:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:14:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:126:5'): output_perm_valid ───────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:125:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:126:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 2.0.4
Check: tests
Result: ERROR
Running 'testthat.R' [5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(Tendril)
>
> test_check("Tendril")
Saving _problems/test_plot_timeseries-21.R
Saving _problems/test_tendrilData-251.R
Saving _problems/test_tendrilData-337.R
Saving _problems/test_tendrilData-365.R
Saving _problems/test_tendrilData-395.R
Saving _problems/test_tendrilData-426.R
Saving _problems/test_tendrilData-458.R
Saving _problems/test_tendrilData-492.R
Saving _problems/test_tendrilData-522.R
Saving _problems/test_tendrilPerm-25.R
Saving _problems/test_tendrilPerm-137.R
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_plot_timeseries.R:8:5'): Creation of plot timeseries ───────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test_plot_timeseries.R:7:3
2. │ └─base::withCallingHandlers(...)
3. └─Tendril::Tendril(...) at test_plot_timeseries.R:8:5
4. └─Tendril:::dataSetup(...)
5. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
6. └─dplyr:::lazy_defunct("rename", hint = FALSE)
7. └─lifecycle::deprecate_stop(...)
8. └─lifecycle:::deprecate_stop0(msg)
9. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:238:5'): tendril_result_correct ──────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:238:5
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:324:3'): tendril_result_correct_filter_double_events ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:324:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:356:3'): tendril_result_no_SubjList_supplied ─────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:356:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:384:3'): tendril_result_no_SubjList_supplied_single_rotation_factor ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:384:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:413:3'): tendril_proportional_rotation_factor ────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:413:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:445:3'): tendril_error_event_after_dropout ───────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilData.R:445:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...)
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:478:3'): tendril_check_correct_imbalance_and_variable_rotation ──
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:478:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilData.R:509:3'): tendril_check_for_presence_of_term ──────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. └─Tendril::Tendril(...) at test_tendrilData.R:509:3
2. └─Tendril:::dataSetup(...)
3. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
4. └─dplyr:::lazy_defunct("rename", hint = FALSE)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:14:5'): input_perm_valid ─────────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:13:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:14:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
── Error ('test_tendrilPerm.R:126:5'): output_perm_valid ───────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `rename_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `rename()` instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_tendrilPerm.R:125:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─Tendril::Tendril(...) at test_tendrilPerm.R:126:5
7. └─Tendril:::dataSetup(...)
8. └─dplyr::rename_(data, Unique.Subject.Identifier = Unique.Subject.Identifier)
9. └─dplyr:::lazy_defunct("rename", hint = FALSE)
10. └─lifecycle::deprecate_stop(...)
11. └─lifecycle:::deprecate_stop0(msg)
12. └─rlang::cnd_signal(...)
[ FAIL 11 | WARN 0 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
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