CRAN Package Check Results for Maintainer ‘Sonsoles López-Pernas <sonsoles.lopez at uef.fi>’

Last updated on 2025-12-28 01:49:20 CET.

Package	ERROR	WARN	OK
tna	1	3	9

Package tna

Current CRAN status: ERROR: 1, WARN: 3, OK: 9

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: Warning: namespace ‘seqHMM’ is not available and has been replaced Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.0
Check: examples
Result: ERROR Running examples in 'tna-Ex.R' failed The error most likely occurred in: > ### Name: cliques > ### Title: Identify Cliques in a Transition Network > ### Aliases: cliques cliques.tna cliques.group_tna > > ### ** Examples > > model <- tna(group_regulation) > > # Find 2-cliques (dyads) > cliq <- cliques(model, size = 2) > > model <- group_tna(engagement_mmm) Error in `[.data.table`(out, , `:=`(ll, logSumExp(log_alpha[time == time[.N]])), : attempt access index 6/6 in VECTOR_ELT Calls: group_tna ... posterior_probs -> posterior_probs.mhmm -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 1.1.0
Check: tests
Result: ERROR Running 'testthat.R' [4s] Running the tests in 'tests/testthat.R' failed. Complete output: > suppressPackageStartupMessages(library("tna")) > library("testthat") Attaching package: 'testthat' The following object is masked from 'package:tna': compare > > test_check("tna") Error in `source_dir()`: ! Failed to evaluate './helper-mock.R'. Caused by error in `[.data.table`: ! attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::test_check("tna") 2. │ └─testthat::test_dir(...) 3. │ └─testthat:::test_files(...) 4. │ └─testthat:::test_files_serial(...) 5. │ └─testthat:::test_files_setup_state(...) 6. │ └─testthat::source_test_helpers(".", env) 7. │ └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE) 8. │ └─base::lapply(...) 9. │ └─testthat (local) FUN(X[[i]], ...) 10. │ └─testthat::source_file(...) 11. │ ├─base::withCallingHandlers(...) 12. │ └─base::eval(exprs, env) 13. │ └─base::eval(exprs, env) 14. │ └─tna::group_tna(engagement_mmm) at ./helper-mock.R:47:1 15. │ ├─tna::group_model(x = x, type = "relative", ...) 16. │ └─tna:::group_model.mhmm(x = x, type = "relative", ...) 17. │ ├─tna:::group_model.default(...) 18. │ │ └─group %m% seq_len(nrow(x)) 19. │ ├─base::summary(x) 20. │ └─seqHMM:::summary.mhmm(x) 21. │ └─seqHMM::posterior_cluster_probabilities(object) 22. │ ├─seqHMM::posterior_probs(x) 23. │ └─seqHMM:::posterior_probs.mhmm(x) 24. │ ├─...[] 25. │ └─data.table:::`[.data.table`(...) 26. └─base::.handleSimpleError(...) 27. └─testthat (local) h(simpleError(msg, call)) 28. └─cli::cli_abort(...) 29. └─rlang::abort(...) Execution halted Flavor: r-devel-windows-x86_64

Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'communities_and_cliques.Rmd' using rmarkdown --- finished re-building 'communities_and_cliques.Rmd' --- re-building 'complete_tutorial.Rmd' using rmarkdown --- finished re-building 'complete_tutorial.Rmd' --- re-building 'grouped_sequences.Rmd' using rmarkdown Quitting from grouped_sequences.Rmd:74-76 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 6/6 in VECTOR_ELT --- Backtrace: ▆ 1. ├─tna::group_model(engagement_mmm) 2. └─tna:::group_model.mhmm(engagement_mmm) 3. ├─tna:::group_model.default(...) 4. │ └─group %m% seq_len(nrow(x)) 5. ├─base::summary(x) 6. └─seqHMM:::summary.mhmm(x) 7. └─seqHMM::posterior_cluster_probabilities(object) 8. ├─seqHMM::posterior_probs(x) 9. └─seqHMM:::posterior_probs.mhmm(x) 10. ├─...[] 11. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'grouped_sequences.Rmd' failed with diagnostics: attempt access index 6/6 in VECTOR_ELT --- failed re-building 'grouped_sequences.Rmd' --- re-building 'prepare_data.Rmd' using rmarkdown --- finished re-building 'prepare_data.Rmd' --- re-building 'tna.Rmd' using rmarkdown --- finished re-building 'tna.Rmd' SUMMARY: processing the following file failed: 'grouped_sequences.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64