CRAN Package Check Results for Maintainer ‘Jason Sinnwell <sinnwell.jason at mayo.edu>’

Last updated on 2026-02-15 09:51:11 CET.

Package	ERROR	NOTE	OK
fam.recrisk			14
haplo.stats	3	1	10
kinship2			14
pedgene	4		10
pleio		2	12
regmed			14
smartDesign			14
vcpen			14

Package fam.recrisk

Current CRAN status: OK: 14

Package haplo.stats

Current CRAN status: ERROR: 3, NOTE: 1, OK: 10

Additional issues

M1mac

Version: 1.9.7
Check: relative paths in package URLs
Result: NOTE Checking relative paths failed with message: error in inferior call: Failed to locate ‘weave’ output file ‘manualHaploStats.pdf’ or ‘manualHaploStats.html’ for vignette with name ‘manualHaploStats’ and engine ‘R.rsp::asis’. The following files exist in working directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/haplo.stats/doc’: ‘GPL.txt’ (15145 bytes), ‘LICENSE.mayo’ (1024 bytes), ‘haplostats.Rnw’ (170 bytes), ‘haplostats.pdf’ (439058 bytes), ‘index.html’ (1942 bytes), ‘manualHaploStats.pdf.asis’ (170 bytes), ‘manualHaploStats.rnwsave’ (94258 bytes) Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.9.8.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘haplostats.Rmd’ using rmarkdown Quitting from haplostats.Rmd:1216-1224 [anovaGLM] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `anova.haplo.glmlist()`: ! models were not all fitted to the same size of dataset --- Backtrace: ▆ 1. └─haplo.stats::anova.haplo.glm(glmfit.gaus, fit.gaus) 2. └─haplo.stats:::anova.haplo.glmlist(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'haplostats.Rmd' failed with diagnostics: models were not all fitted to the same size of dataset --- failed re-building ‘haplostats.Rmd’ SUMMARY: processing the following file failed: ‘haplostats.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-macos-arm64

Version: 1.9.8.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘haplostats.Rmd’ using rmarkdown 2026-02-15 17:20:21.444 R[1881:751441] XType: Using static font registry. Quitting from haplostats.Rmd:1216-1224 [anovaGLM] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `anova.haplo.glmlist()`: ! models were not all fitted to the same size of dataset --- Backtrace: ▆ 1. └─haplo.stats::anova.haplo.glm(glmfit.gaus, fit.gaus) 2. └─haplo.stats:::anova.haplo.glmlist(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'haplostats.Rmd' failed with diagnostics: models were not all fitted to the same size of dataset --- failed re-building ‘haplostats.Rmd’ SUMMARY: processing the following file failed: ‘haplostats.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-arm64

Version: 1.9.8.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘haplostats.Rmd’ using rmarkdown 2026-02-15 17:11:40.634 R[28658:357111] XType: Using static font registry. Quitting from haplostats.Rmd:1216-1224 [anovaGLM] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `anova.haplo.glmlist()`: ! models were not all fitted to the same size of dataset --- Backtrace: ▆ 1. └─haplo.stats::anova.haplo.glm(glmfit.gaus, fit.gaus) 2. └─haplo.stats:::anova.haplo.glmlist(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'haplostats.Rmd' failed with diagnostics: models were not all fitted to the same size of dataset --- failed re-building ‘haplostats.Rmd’ SUMMARY: processing the following file failed: ‘haplostats.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-arm64

Package kinship2

Current CRAN status: OK: 14

Package pedgene

Current CRAN status: ERROR: 4, OK: 10

Version: 4.1
Check: package dependencies
Result: ERROR Package required but not available: ‘Pedixplorer’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package pleio

Current CRAN status: NOTE: 2, OK: 12

Version: 1.9
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Jason Sinnwell <sinnwell.jason@mayo.edu>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Daniel", "J"), family = "Schaid", role = "aut"), person(given = "Jason", family = "Sinnwell", role = "cre", email = "sinnwell.jason@mayo.edu")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package regmed

Current CRAN status: OK: 14

Package smartDesign

Current CRAN status: OK: 14

Package vcpen

Current CRAN status: OK: 14