Last updated on 2025-05-15 13:51:42 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| Andromeda | 2 | 11 | |
| DatabaseConnector | 13 | ||
| DatabaseConnectorJars | 5 | 8 | |
| EmpiricalCalibration | 13 | ||
| EvidenceSynthesis | 13 | ||
| ParallelLogger | 13 | ||
| SqlRender | 13 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("Andromeda")
Loading required package: Andromeda
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 24 | WARN 2 | SKIP 1 | PASS 30 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• .Platform$OS.type != "windows" is TRUE (1): 'test-object.R:150:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-appending.R:4:3'): Append from same andromeda ──────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea532782e8ca8.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-appending.R:4:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-appending.R:16:3'): Append from other andromeda ────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea532cdd78be.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-appending.R:16:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-appending.R:32:3'): Append from data frame ─────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea5324e65919e.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-appending.R:32:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-appending.R:45:3'): Append from same andromeda with switched column order ──
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea532451d4338.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-appending.R:45:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-appending.R:57:3'): Append from other andromeda with switched column order ──
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea53238ba0d.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-appending.R:57:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-appending.R:73:3'): Append from data frame with switched column order ──
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea5322c8c4df5.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-appending.R:73:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-batching.R:4:3'): batchApply ───────────────────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea532431ad7e4.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-batching.R:4:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-batching.R:19:3'): batchApply safe mode ────────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea532717e9d2d.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-batching.R:19:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-batching.R:40:3'): batchApply progress bar ─────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea53256da494e.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-batching.R:40:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-batching.R:52:3'): groupApply ──────────────────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea53230aae376.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-batching.R:52:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-batching.R:67:3'): groupApply progress bar ─────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea532fce17a8.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-batching.R:67:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-batching.R:80:3'): batchTest ───────────────────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea53252a02d23.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda(cars = cars) at test-batching.R:80:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-dates.R:4:3'): Dates are preserved ─────────────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea5324a8d7919.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-dates.R:4:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-dates.R:34:3'): Times are preserved ────────────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea532687c87f3.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-dates.R:34:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-indices.R:4:3'): Index creation. listing, and removal using column names ──
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea5325a8ed614.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda(cars = cars) at test-indices.R:4:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-indices.R:26:3'): Index creation. listing, and removal using index name ──
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea5327a1fa03.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda(cars = cars) at test-indices.R:26:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-loadingSaving.R:4:3'): Saving and loading ──────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea532549d1e4a.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-loadingSaving.R:4:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-loadingSaving.R:46:3'): Object cleanup when loading and saving ──
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea532705da655.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-loadingSaving.R:46:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-loadingSaving.R:68:3'): saveAndromeda handles bad file paths and tilde expansion ──
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea53246cd946d.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda(cars = cars) at test-loadingSaving.R:68:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-loadingSaving.R:78:3'): saveAndromeda perfroms tilde expansion ──
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea5325366d53d.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda(cars = cars) at test-loadingSaving.R:78:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-loadingSaving.R:88:3'): getAndromedaTempDiskSpace works ────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea532dc2ea32.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda(cars = cars) at test-loadingSaving.R:88:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-object.R:4:3'): Object creation ────────────────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea532754b9026.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-object.R:4:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-object.R:23:3'): Tables from data frames ───────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea53255b1b4bf.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-object.R:23:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
── Error ('test-object.R:37:3'): Tables from tables ────────────────────────────
Error in `.local(drv, ...)`: rapi_startup: Failed to open database: {"exception_type":"IO","exception_message":"Could not write file \"/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp6Wlr9i/filea5321e5bc93f.duckdb\": No space left on device","errno":"28"}
Backtrace:
▆
1. ├─Andromeda::andromeda() at test-object.R:37:3
2. │ └─Andromeda:::.createAndromeda(options = options)
3. │ ├─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
4. │ └─duckdb::dbConnect(duckdb::duckdb(), dbdir = dbdir)
5. │ └─duckdb (local) .local(drv, ...)
6. │ └─duckdb::duckdb(dbdir, read_only, bigint, config)
7. │ ├─methods::new(...)
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─duckdb:::rethrow_rapi_startup(dbdir, read_only, config, environment_scan)
11. │ ├─rlang::try_fetch(...)
12. │ │ ├─base::tryCatch(...)
13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
16. │ │ └─base::withCallingHandlers(...)
17. │ └─duckdb:::rapi_startup(dbdir, readonly, configsexp, environment_scan)
18. └─base::.handleSimpleError(...)
19. └─rlang (local) h(simpleError(msg, call))
20. └─handlers[[1L]](cnd)
21. └─duckdb:::rethrow_error_from_rapi(e, call)
22. └─rlang::abort(msg, call = call)
[ FAIL 24 | WARN 2 | SKIP 1 | PASS 30 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("Andromeda")
Loading required package: Andromeda
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 1 | WARN 3 | SKIP 1 | PASS 98 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• .Platform$OS.type != "windows" is TRUE (1): 'test-object.R:150:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-loadingSaving.R:103:5'): .checkAvailableSpace works ──────────
`.checkAvailableSpace()` did not produce any warnings.
[ FAIL 1 | WARN 3 | SKIP 1 | PASS 98 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 5, OK: 8
Version: 1.1.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Martijn Schuemie <schuemie@ohdsi.org>’
Found the following (possibly) invalid file URI:
URI: ../../issues
From: README.md
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.1.0
Check: installed package size
Result: NOTE
installed size is 7.6Mb
sub-directories of 1Mb or more:
java 7.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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