Last updated on 2025-12-04 09:50:32 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| batsch | 13 | ||
| boggy | 13 | ||
| CAOP.RAA.2024 | 3 | 10 | |
| eunis.habitats | 13 | ||
| grantham | 13 | ||
| guescini | 13 | ||
| gwasrapidd | 13 | ||
| hgnc | 13 | ||
| karlen | 13 | ||
| lievens | 13 | ||
| mgi.report.reader | 10 | 3 | |
| quincunx | 9 | 4 | |
| ruijter | 13 | ||
| rutledge | 13 | ||
| sdtm.terminology | 13 | ||
| sisti | 13 | ||
| vermeulen | 13 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.0.5
Check: installed package size
Result: NOTE
installed size is 7.3Mb
sub-directories of 1Mb or more:
extdata 5.3Mb
help 1.9Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 0.1.3
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.2.0 because package code uses the pipe
placeholder syntax added in R 4.2.0.
File(s) using such syntax:
‘read_mgi_biotype_conflict_rpt.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: ERROR: 9, OK: 4
Version: 0.1.10
Check: package dependencies
Result: ERROR
Package required but not available: ‘tidyjson’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1.10
Check: examples
Result: ERROR
Running examples in 'quincunx-Ex.R' failed
The error most likely occurred in:
> ### Name: get_cohorts
> ### Title: Get PGS Catalog Cohorts
> ### Aliases: get_cohorts
>
> ### ** Examples
>
> # Get information about specific cohorts by their symbols (acronyms)
> get_cohorts(cohort_symbol = c('23andMe', 'IPOBCS'))
Error in `purrr::map()`:
ℹ In index: 1.
Caused by error:
! object 'at_depth' is not exported by 'namespace:purrr'
Backtrace:
▆
1. ├─quincunx::get_cohorts(cohort_symbol = c("23andMe", "IPOBCS"))
2. │ ├─quincunx:::coerce_to_s4_cohorts(...)
3. │ └─quincunx:::get_cohort_by_cohort_symbol(...)
4. │ ├─purrr::pmap(...)
5. │ │ └─purrr:::pmap_("list", .l, .f, ..., .progress = .progress)
6. │ │ └─purrr:::vctrs_list_compat(.l, error_call = .purrr_error_call)
7. │ │ └─purrr:::vctrs_vec_compat(x, user_env)
8. │ └─purrr::map(...)
9. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
10. │ ├─purrr:::with_indexed_errors(...)
11. │ │ └─base::withCallingHandlers(...)
12. │ ├─purrr:::call_with_cleanup(...)
13. │ └─purrr (local) .f(.x[[i]], ...)
14. │ └─quincunx (local) f(...)
15. │ └─quincunx:::get(...)
16. │ └─quincunx:::request_all(...)
17. │ └─quincunx:::is_paginated(obj$json)
18. │ └─quincunx:::count(json_string)
19. ├─base::loadNamespace(x)
20. │ └─base::namespaceImportFrom(...)
21. │ └─base::importIntoEnv(impenv, impnames, ns, impvars)
22. │ └─base::stop(...)
23. └─base::.handleSimpleError(...)
24. └─purrr (local) h(simpleError(msg, call))
25. └─cli::cli_abort(...)
26. └─rlang::abort(...)
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.1.10
Check: tests
Result: ERROR
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(quincunx)
>
> test_check("quincunx")
Saving _problems/test-count-2.R
Saving _problems/test-count-7.R
Saving _problems/test-count-11.R
Saving _problems/test-is_paginated-3.R
Saving _problems/test-is_paginated-13.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-count.R:2:3'): normal usage ────────────────────────────────────
Error: object 'at_depth' is not exported by 'namespace:purrr'
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-count.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─quincunx:::count("{\"count\":0,\"next\": \"asdas\"}")
5. └─base::loadNamespace(x)
6. └─base::namespaceImportFrom(...)
7. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-count.R:7:3'): returns the top level match ─────────────────────
Error: object 'at_depth' is not exported by 'namespace:purrr'
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-count.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─quincunx:::count("{\"count\":42,\"next\":{\"count\":43}}")
5. └─base::loadNamespace(x)
6. └─base::namespaceImportFrom(...)
7. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-count.R:11:3'): no match returns NA_integer_ ───────────────────
Error: object 'at_depth' is not exported by 'namespace:purrr'
Backtrace:
▆
1. ├─testthat::expect_true(is.na(count("{\"count\": null}"))) at test-count.R:11:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─quincunx:::count("{\"count\": null}")
5. └─base::loadNamespace(x)
6. └─base::namespaceImportFrom(...)
7. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-is_paginated.R:3:3'): is not paginated ─────────────────────────
Error: object 'at_depth' is not exported by 'namespace:purrr'
Backtrace:
▆
1. ├─testthat::expect_false(is_paginated("{\n \"id\": \"PGP000001\"\n }")) at test-is_paginated.R:3:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─quincunx:::is_paginated("{\n \"id\": \"PGP000001\"\n }")
5. │ └─quincunx:::count(json_string)
6. └─base::loadNamespace(x)
7. └─base::namespaceImportFrom(...)
8. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-is_paginated.R:13:3'): is paginated ────────────────────────────
Error: object 'at_depth' is not exported by 'namespace:purrr'
Backtrace:
▆
1. ├─testthat::expect_true(is_paginated(txt)) at test-is_paginated.R:13:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─quincunx:::is_paginated(txt)
5. │ └─quincunx:::count(json_string)
6. └─base::loadNamespace(x)
7. └─base::namespaceImportFrom(...)
8. └─base::importIntoEnv(impenv, impnames, ns, impvars)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 0.1.10
Check: tests
Result: ERROR
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(quincunx)
>
> test_check("quincunx")
Saving _problems/test-count-2.R
Saving _problems/test-count-7.R
Saving _problems/test-count-11.R
Saving _problems/test-is_paginated-3.R
Saving _problems/test-is_paginated-13.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-count.R:2:3'): normal usage ────────────────────────────────────
Error: object 'at_depth' is not exported by 'namespace:purrr'
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-count.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─quincunx:::count("{\"count\":0,\"next\": \"asdas\"}")
5. └─base::loadNamespace(x)
6. └─base::namespaceImportFrom(...)
7. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-count.R:7:3'): returns the top level match ─────────────────────
Error: object 'at_depth' is not exported by 'namespace:purrr'
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-count.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─quincunx:::count("{\"count\":42,\"next\":{\"count\":43}}")
5. └─base::loadNamespace(x)
6. └─base::namespaceImportFrom(...)
7. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-count.R:11:3'): no match returns NA_integer_ ───────────────────
Error: object 'at_depth' is not exported by 'namespace:purrr'
Backtrace:
▆
1. ├─testthat::expect_true(is.na(count("{\"count\": null}"))) at test-count.R:11:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─quincunx:::count("{\"count\": null}")
5. └─base::loadNamespace(x)
6. └─base::namespaceImportFrom(...)
7. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-is_paginated.R:3:3'): is not paginated ─────────────────────────
Error: object 'at_depth' is not exported by 'namespace:purrr'
Backtrace:
▆
1. ├─testthat::expect_false(is_paginated("{\n \"id\": \"PGP000001\"\n }")) at test-is_paginated.R:3:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─quincunx:::is_paginated("{\n \"id\": \"PGP000001\"\n }")
5. │ └─quincunx:::count(json_string)
6. └─base::loadNamespace(x)
7. └─base::namespaceImportFrom(...)
8. └─base::importIntoEnv(impenv, impnames, ns, impvars)
── Error ('test-is_paginated.R:13:3'): is paginated ────────────────────────────
Error: object 'at_depth' is not exported by 'namespace:purrr'
Backtrace:
▆
1. ├─testthat::expect_true(is_paginated(txt)) at test-is_paginated.R:13:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─quincunx:::is_paginated(txt)
5. │ └─quincunx:::count(json_string)
6. └─base::loadNamespace(x)
7. └─base::namespaceImportFrom(...)
8. └─base::importIntoEnv(impenv, impnames, ns, impvars)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
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