CRAN Package Check Results for Maintainer ‘Rampal S. Etienne <r.s.etienne at rug.nl>’

Last updated on 2025-04-12 20:52:23 CEST.

Package	NOTE	OK
DAISIE	6	8
DAMOCLES		14
DDD	4	10
PBD	11	3
SADISA		14
secsse	8	7

Package DAISIE

Current CRAN status: NOTE: 6, OK: 8

Version: 4.5.0
Check: installed package size
Result: NOTE installed size is 36.3Mb sub-directories of 1Mb or more: libs 34.1Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 4.5.0
Check: package dependencies
Result: NOTE Package which this enhances but not available for checking: 'doMC' Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64

Package DAMOCLES

Current CRAN status: OK: 14

Package DDD

Current CRAN status: NOTE: 4, OK: 10

Version: 5.2.2
Check: installed package size
Result: NOTE installed size is 7.8Mb sub-directories of 1Mb or more: libs 7.3Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package PBD

Current CRAN status: NOTE: 11, OK: 3

Version: 1.4
Check: Rd files
Result: NOTE checkRd: (-1) pbd_loglik.Rd:31: Lost braces 31 | \code{pars2[1]} {set the conditioning on non-extinction of the clade (1) or not (0) \cr \cr} | ^ checkRd: (-1) pbd_loglik.Rd:32: Lost braces 32 | \code{pars2[2]} {sets whether the likelihood is for the branching times (0) or the phylogeny (1) \cr \cr} | ^ checkRd: (-1) pbd_loglik.Rd:33: Lost braces 33 | \code{pars2[3]} {sets whether the first element of the branching times is the stem (1) or the crown (2) age \cr \cr} | ^ checkRd: (-1) pbd_loglik.Rd:34: Lost braces 34 | \code{pars2[4]} {sets whether the parameters and likelihood should be shown on screen (1) or not (0) \cr \cr} | ^ checkRd: (-1) pbd_loglik.Rd:35: Lost braces 35 | \code{pars2[5]} {sets which method should be used in the ode-solver. Default is 'lsoda'. See package deSolve for details. \cr \cr} | ^ checkRd: (-1) pbd_loglik.Rd:36: Lost braces 36 | \code{pars2[6]}{Sets the lower bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr} | ^ checkRd: (-1) pbd_loglik.Rd:37: Lost braces 37 | \code{pars2[7]}{Sets the upper bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 1.4
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘ade4’ All declared Imports should be used. Flavor: r-devel-linux-x86_64-fedora-gcc

Package SADISA

Current CRAN status: OK: 14

Package secsse

Current CRAN status: NOTE: 8, OK: 7

Version: 3.1.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: cla_secsse_ml.Rd: DDD cla_secsse_ml_func_def_pars.Rd: DDD default_params_doc.Rd: DDD secsse_ml.Rd: DDD secsse_ml_func_def_pars.Rd: DDD Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 3.1.0
Check: installed package size
Result: NOTE installed size is 9.6Mb sub-directories of 1Mb or more: doc 1.1Mb libs 8.2Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64