CRAN Package Check Results for Maintainer ‘Michelle Nixon <pistner at psu.edu>’

Last updated on 2024-05-02 11:52:11 CEST.

Package	ERROR	NOTE
fido	2	10

Package fido

Current CRAN status: ERROR: 2, NOTE: 10

Additional issues

noSuggests

Version: 1.0.4
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘MicrobeDS’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 1.0.4
Check: Rd files
Result: NOTE checkRd: (-1) maltipoo_fit.Rd:72: Lost braces; missing escapes or markup? 72 | Where A = (I_N + X * Gamma * X')^{-1}, K^{-1} = Xi is a (D-1)x(D-1) | ^ checkRd: (-1) maltipoo_fit.Rd:72: Lost braces; missing escapes or markup? 72 | Where A = (I_N + X * Gamma * X')^{-1}, K^{-1} = Xi is a (D-1)x(D-1) | ^ checkRd: (-1) maltipoo_fit.Rd:74: Lost braces; missing escapes or markup? 74 | e^{ell_i} is a scale for that variance component and Phi^{-1} is | ^ checkRd: (-1) maltipoo_fit.Rd:74: Lost braces; missing escapes or markup? 74 | e^{ell_i} is a scale for that variance component and Phi^{-1} is | ^ checkRd: (-1) optimMaltipooCollapsed.Rd:110: Lost braces; missing escapes or markup? 110 | Where A = (I_N + e^{ell_1}\\*X\\*U_1\\*X' + ... + e^{ell_P}\\*X\\*U_P\\*X' ), | ^ checkRd: (-1) optimMaltipooCollapsed.Rd:110: Lost braces; missing escapes or markup? 110 | Where A = (I_N + e^{ell_1}\\*X\\*U_1\\*X' + ... + e^{ell_P}\\*X\\*U_P\\*X' ), | ^ checkRd: (-1) optimPibbleCollapsed.Rd:45: Lost braces; missing escapes or markup? 45 | \item{AInv}{N x N precision matrix given by (I_N + X'\emph{Gamma}X)^{-1}} | ^ checkRd: (-1) optimPibbleCollapsed.Rd:123: Lost braces; missing escapes or markup? 123 | matrix, Gamma is a Q x Q covariance matrix, and Phi^{-1} is ALRInv_D | ^ checkRd: (-1) orthus_fit.Rd:72: Lost braces; missing escapes or markup? 72 | Where Gamma is a Q x Q covariance matrix, and Phi^{-1} is | ^ checkRd: (-1) pibble_fit.Rd:72: Lost braces; missing escapes or markup? 72 | Where Gamma is a Q x Q covariance matrix, and Phi^{-1} is | ^ checkRd: (-1) uncollapsePibble.Rd:66: Lost braces; missing escapes or markup? 66 | matrix, Gamma is a Q x Q covariance matrix, and Phi^{-1} is ALRInv_D | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64

Version: 1.0.4
Check: installed package size
Result: NOTE installed size is 55.8Mb sub-directories of 1Mb or more: libs 54.2Mb Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.0.4
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'MicrobeDS', 'phyloseq' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.0.4
Check: tests
Result: ERROR Running ‘testthat.R’ [8s/8s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: attr(,"class") [1] "gg" "ggplot" [ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-ilr.R:11:3'): clr plus summary works ─────────────────────────── <packageNotFoundError/error/condition> Error in `library(phyloseq)`: there is no package called 'phyloseq' Backtrace: ▆ 1. └─base::library(phyloseq) at test-ilr.R:11:2 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.0.4
Check: tests
Result: ERROR Running ‘testthat.R’ [14s/30s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: attr(,"class") [1] "gg" "ggplot" [ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-ilr.R:11:3'): clr plus summary works ─────────────────────────── <packageNotFoundError/error/condition> Error in `library(phyloseq)`: there is no package called 'phyloseq' Backtrace: ▆ 1. └─base::library(phyloseq) at test-ilr.R:11:2 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-x86_64