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Last updated on 2026-09-13 23:50:49 CEST.
| Package | OK | NOTE | ERROR |
|---|---|---|---|
| diseasemapping | 8 | 5 | |
| geostatsp | 10 | 1 | 2 |
| mapmisc | 13 |
Current CRAN status: OK: 8, NOTE: 5
Version: 2.0.6
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
diseasemapping/inst/doc/bymPc.R (.Names: 1)
diseasemapping/man/cancerRates.Rd (.Names: 1)
'.Names' should be changed to 'names'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 10, NOTE: 1, ERROR: 2
Version: 2.0.11
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
geostatsp/R/maternGmrfPrec.R (.Names: 2, .Dim: 1, .Dimnames: 1)
'.Names' should be changed to 'names'.
'.Dim' should be changed to 'dim'.
'.Dimnames' should be changed to 'dimnames'.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in ‘geostatsp-Ex.R’ failed
The error most likely occurred in:
> ### Name: RFsimulate
> ### Title: Simulation of Random Fields
> ### Aliases: RFsimulate modelRandomFields RFsimulate RFsimulate-methods
> ### RFsimulate,ANY,SpatRaster-method RFsimulate,numeric,SpatRaster-method
> ### RFsimulate,numeric,SpatVector-method
> ### RFsimulate,RMmodel,SpatVector-method
> ### RFsimulate,RMmodel,SpatRaster-method
> ### RFsimulate,matrix,SpatRaster-method
> ### RFsimulate,matrix,SpatVector-method RFsimulate,data.frame,ANY-method
> ### Keywords: spatial
>
> ### ** Examples
>
> # the following prevents some errors on the cran check
> Sys.unsetenv(c("OMP_THREAD_LIMIT", "KMP_DEVICE_THREAD_LIMIT", "KMP_TEAMS_THREAD_LIMIT"))
> Sys.setenv(
+ OMP_NUM_THREADS = "2",
+ OMP_DYNAMIC = "FALSE",
+ OPENBLAS_NUM_THREADS = "2",
+ MKL_NUM_THREADS = "2",
+ MKL_DYNAMIC = "FALSE",
+ BLIS_NUM_THREADS = "2",
+ VECLIB_MAXIMUM_THREADS = "2"
+ )
> options(mc.cores = 2)
>
>
> library('geostatsp')
>
> # exclude this line to use the RandomFields package
> options(useRandomFields = FALSE)
>
> model1 <- c(var=5, range=1,shape=0.5)
>
>
> myraster = rast(nrows=20,ncols=30,extent = ext(0,6,0,4),
+ crs="+proj=utm +zone=17 +datum=NAD27 +units=m +no_defs")
>
> set.seed(0)
>
> simu <- RFsimulate(model1, x=myraster, n=3)
OMP: Warning #96: Cannot form a team with 28 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.2.0
Check: tests
Result: ERROR
Running ‘RFsimulate.R’ [90m/45m]
Running ‘geostatData.R’
Running ‘krige.R’
Running ‘lgcp.R’
Running ‘lgm.R’ [23s/23s]
Running ‘lgmRaster.R’ [0m/44m]
Running ‘likfitLgm.R’
Running the tests in ‘tests/RFsimulate.R’ failed.
Complete output:
> library("geostatsp")
Loading required package: Matrix
Loading required package: terra
terra 1.9.50
>
> Sys.unsetenv(c("OMP_THREAD_LIMIT", "KMP_DEVICE_THREAD_LIMIT", "KMP_TEAMS_THREAD_LIMIT"))
> Sys.setenv(
+ OMP_NUM_THREADS = "2",
+ OMP_DYNAMIC = "FALSE",
+ OPENBLAS_NUM_THREADS = "2",
+ MKL_NUM_THREADS = "2",
+ MKL_DYNAMIC = "FALSE",
+ BLIS_NUM_THREADS = "2",
+ VECLIB_MAXIMUM_THREADS = "2"
+ )
>
> options(mc.cores = if (.Platform$OS.type == "windows") 1L else 2L)
>
> # don't test using the randomFields package, it's currently unavailable
> options(useRandomFields = FALSE)
>
> model <- c(var=5, range=20,shape=0.5)
>
> # any old crs
> theCrs = "+proj=utm +zone=17 +datum=NAD27 +units=m +no_defs"
>
>
> myraster = rast(nrows=20,ncols=20,extent = ext(100,110,100,110),
+ crs=theCrs)
>
> set.seed(0)
> simu = RFsimulate(model = rbind(a=model, b=model+0.1),
+ x=myraster, n=4
+ )
OMP: Warning #96: Cannot form a team with 28 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Running the tests in ‘tests/lgmRaster.R’ failed.
Complete output:
> #+ setup
> library('geostatsp')
Loading required package: Matrix
Loading required package: terra
terra 1.9.50
> #'
>
> #' # simulated data
>
> # exclude this line to use the RandomFields package
> options(useRandomFields = FALSE)
>
> Ncell = 40
>
> myRaster = squareRaster(ext(0,6000,0,6000), Ncell)
>
> myParam=c(oneminusar=0.1, conditionalVariance=2.5^2,shape=2)
> myQ = maternGmrfPrec(myRaster, param=myParam)
> attributes(myQ)$info$optimalShape
shape variance range cellSize
4.092496 110.524266 900.000000 150.000000
> set.seed(0)
> mySim = RFsimulate(attributes(myQ)$info$optimalShape, myRaster)
OMP: Warning #96: Cannot form a team with 28 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in ‘geostatsp-Ex.R’ failed
The error most likely occurred in:
> ### Name: RFsimulate
> ### Title: Simulation of Random Fields
> ### Aliases: RFsimulate modelRandomFields RFsimulate RFsimulate-methods
> ### RFsimulate,ANY,SpatRaster-method RFsimulate,numeric,SpatRaster-method
> ### RFsimulate,numeric,SpatVector-method
> ### RFsimulate,RMmodel,SpatVector-method
> ### RFsimulate,RMmodel,SpatRaster-method
> ### RFsimulate,matrix,SpatRaster-method
> ### RFsimulate,matrix,SpatVector-method RFsimulate,data.frame,ANY-method
> ### Keywords: spatial
>
> ### ** Examples
>
> # the following prevents some errors on the cran check
> Sys.unsetenv(c("OMP_THREAD_LIMIT", "KMP_DEVICE_THREAD_LIMIT", "KMP_TEAMS_THREAD_LIMIT"))
> Sys.setenv(
+ OMP_NUM_THREADS = "2",
+ OMP_DYNAMIC = "FALSE",
+ OPENBLAS_NUM_THREADS = "2",
+ MKL_NUM_THREADS = "2",
+ MKL_DYNAMIC = "FALSE",
+ BLIS_NUM_THREADS = "2",
+ VECLIB_MAXIMUM_THREADS = "2"
+ )
> options(mc.cores = 2)
>
>
> library('geostatsp')
>
> # exclude this line to use the RandomFields package
> options(useRandomFields = FALSE)
>
> model1 <- c(var=5, range=1,shape=0.5)
>
>
> myraster = rast(nrows=20,ncols=30,extent = ext(0,6,0,4),
+ crs="+proj=utm +zone=17 +datum=NAD27 +units=m +no_defs")
>
> set.seed(0)
>
> simu <- RFsimulate(model1, x=myraster, n=3)
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.2.0
Check: tests
Result: ERROR
Running ‘RFsimulate.R’ [90m/45m]
Running ‘geostatData.R’
Running ‘krige.R’
Running ‘lgcp.R’ [25s/20s]
Running ‘lgm.R’ [25s/25s]
Running ‘lgmRaster.R’
Running the tests in ‘tests/RFsimulate.R’ failed.
Complete output:
> library("geostatsp")
Loading required package: Matrix
Loading required package: terra
terra 1.9.50
>
> Sys.unsetenv(c("OMP_THREAD_LIMIT", "KMP_DEVICE_THREAD_LIMIT", "KMP_TEAMS_THREAD_LIMIT"))
> Sys.setenv(
+ OMP_NUM_THREADS = "2",
+ OMP_DYNAMIC = "FALSE",
+ OPENBLAS_NUM_THREADS = "2",
+ MKL_NUM_THREADS = "2",
+ MKL_DYNAMIC = "FALSE",
+ BLIS_NUM_THREADS = "2",
+ VECLIB_MAXIMUM_THREADS = "2"
+ )
>
> options(mc.cores = if (.Platform$OS.type == "windows") 1L else 2L)
>
> # don't test using the randomFields package, it's currently unavailable
> options(useRandomFields = FALSE)
>
> model <- c(var=5, range=20,shape=0.5)
>
> # any old crs
> theCrs = "+proj=utm +zone=17 +datum=NAD27 +units=m +no_defs"
>
>
> myraster = rast(nrows=20,ncols=20,extent = ext(100,110,100,110),
+ crs=theCrs)
>
> set.seed(0)
> simu = RFsimulate(model = rbind(a=model, b=model+0.1),
+ x=myraster, n=4
+ )
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
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