Last updated on 2025-10-10 13:50:08 CEST.
Package | ERROR | OK |
---|---|---|
MeasurementDiagnostics | 13 | |
visOmopResults | 4 | 9 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 4, OK: 9
Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a01_tables.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘a01_tables.Rmd’
--- re-building ‘a02_plots.Rmd’ using rmarkdown
Quitting from a02_plots.Rmd:102-119 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `gzfile()`:
! cannot open the connection
---
Backtrace:
▆
1. └─visOmopResults::requireExtrafont()
2. └─extrafont::font_import(prompt = FALSE)
3. └─extrafont::ttf_import(paths, recursive, pattern)
4. └─extrafont:::ttf_extract(ttfiles)
5. └─extrafont:::gzcopy_exclude(...)
6. └─base::gzfile(dest, "w")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a02_plots.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘a02_plots.Rmd’
--- re-building ‘a03_quarto_reports.Rmd’ using rmarkdown
Quitting from a03_quarto_reports.Rmd:83-105 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `gzfile()`:
! cannot open the connection
---
Backtrace:
▆
1. └─visOmopResults::requireExtrafont()
2. └─extrafont::font_import(prompt = FALSE)
3. └─extrafont::ttf_import(paths, recursive, pattern)
4. └─extrafont:::ttf_extract(ttfiles)
5. └─extrafont:::gzcopy_exclude(...)
6. └─base::gzfile(dest, "w")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'a03_quarto_reports.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘a03_quarto_reports.Rmd’
--- re-building ‘a04_shiny_apps.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘a04_shiny_apps.Rmd’
SUMMARY: processing the following files failed:
‘a02_plots.Rmd’ ‘a03_quarto_reports.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [98s/57s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(visOmopResults)
>
> test_check("visOmopResults")
Starting 2 test processes
[ FAIL 4 | WARN 168 | SKIP 7 | PASS 425 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-datatableInternal.R:11:3',
'test-datatableInternal.R:26:3', 'test-formatTable.R:66:3',
'test-formatTable.R:84:3', 'test-reactableInternal.R:11:3',
'test-reactableInternal.R:35:3', 'test-visOmopTable.R:394:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-formatTable.R:104:3'): global options works ────────────────────
Error in `dplyr::filter(tinytable@style, i == ii & j == jj)`: i In argument: `i == ii & j == jj`.
Caused by error:
! object 'i' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-formatTable.R:104:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─visOmopResults:::getTinytableStyle(tab, -1, 12)
5. │ ├─dplyr::as_tibble(...) at tests/testthat/setup.R:2:3
6. │ ├─dplyr::filter(tinytable@style, i == ii & j == jj)
7. │ └─dplyr:::filter.data.frame(tinytable@style, i == ii & j == jj)
8. │ └─dplyr:::filter_rows(.data, dots, by)
9. │ └─dplyr:::filter_eval(...)
10. │ ├─base::withCallingHandlers(...)
11. │ └─mask$eval_all_filter(dots, env_filter)
12. │ └─dplyr (local) eval()
13. └─base::.handleSimpleError(`<fn>`, "object 'i' not found", base::quote(NULL))
14. └─dplyr (local) h(simpleError(msg, call))
15. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-tinyTable.R:38:3'): tinytable ──────────────────────────────────
Error in `dplyr::filter(tinytable@style, i == ii & j == jj)`: i In argument: `i == ii & j == jj`.
Caused by error:
! object 'i' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-tinyTable.R:38:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─visOmopResults:::getTinytableStyle(tinytableInternal, -1, 9)
5. │ ├─dplyr::as_tibble(...) at tests/testthat/setup.R:2:3
6. │ ├─dplyr::filter(tinytable@style, i == ii & j == jj)
7. │ └─dplyr:::filter.data.frame(tinytable@style, i == ii & j == jj)
8. │ └─dplyr:::filter_rows(.data, dots, by)
9. │ └─dplyr:::filter_eval(...)
10. │ ├─base::withCallingHandlers(...)
11. │ └─mask$eval_all_filter(dots, env_filter)
12. │ └─dplyr (local) eval()
13. └─base::.handleSimpleError(`<fn>`, "object 'i' not found", base::quote(NULL))
14. └─dplyr (local) h(simpleError(msg, call))
15. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-visTable.R:161:3'): global options works ───────────────────────
Error in `dplyr::filter(tinytable@style, i == ii & j == jj)`: i In argument: `i == ii & j == jj`.
Caused by error:
! object 'i' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-visTable.R:161:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─visOmopResults:::getTinytableStyle(tab, -1, 12)
5. │ ├─dplyr::as_tibble(...) at tests/testthat/setup.R:2:3
6. │ ├─dplyr::filter(tinytable@style, i == ii & j == jj)
7. │ └─dplyr:::filter.data.frame(tinytable@style, i == ii & j == jj)
8. │ └─dplyr:::filter_rows(.data, dots, by)
9. │ └─dplyr:::filter_eval(...)
10. │ ├─base::withCallingHandlers(...)
11. │ └─mask$eval_all_filter(dots, env_filter)
12. │ └─dplyr (local) eval()
13. └─base::.handleSimpleError(`<fn>`, "object 'i' not found", base::quote(NULL))
14. └─dplyr (local) h(simpleError(msg, call))
15. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-visOmopTable.R:416:3'): global options works ───────────────────
Error in `dplyr::filter(tinytable@style, i == ii & j == jj)`: i In argument: `i == ii & j == jj`.
Caused by error:
! object 'i' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-visOmopTable.R:416:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─visOmopResults:::getTinytableStyle(tab, -1, 12)
5. │ ├─dplyr::as_tibble(...) at tests/testthat/setup.R:2:3
6. │ ├─dplyr::filter(tinytable@style, i == ii & j == jj)
7. │ └─dplyr:::filter.data.frame(tinytable@style, i == ii & j == jj)
8. │ └─dplyr:::filter_rows(.data, dots, by)
9. │ └─dplyr:::filter_eval(...)
10. │ ├─base::withCallingHandlers(...)
11. │ └─mask$eval_all_filter(dots, env_filter)
12. │ └─dplyr (local) eval()
13. └─base::.handleSimpleError(`<fn>`, "object 'i' not found", base::quote(NULL))
14. └─dplyr (local) h(simpleError(msg, call))
15. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
[ FAIL 4 | WARN 168 | SKIP 7 | PASS 425 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
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