CRAN Package Check Results for Maintainer ‘Shuai Ni <Nishuai at wakerbio.com>’

Last updated on 2026-04-17 11:54:30 CEST.

Package	ERROR	OK
lisat	3	10

Package lisat

Current CRAN status: ERROR: 3, OK: 10

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [5s/5s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-release-macos-arm64

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘lisat-intro.Rmd’ using rmarkdown Quitting from lisat-intro.Rmd:107-111 [cis_analysis] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.frame`: ! undefined columns selected --- Backtrace: ▆ 1. └─lisat::CIS(IS_raw = IS_raw, connect_distance = 50000) 2. ├─IS_raw[, c("Locus", "Chr", "nearest_gene_name")] 3. └─base::`[.data.frame`(IS_raw, , c("Locus", "Chr", "nearest_gene_name")) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'lisat-intro.Rmd' failed with diagnostics: undefined columns selected --- failed re-building ‘lisat-intro.Rmd’ SUMMARY: processing the following file failed: ‘lisat-intro.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [10s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-release-macos-x86_64

Version: 0.1.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg38.knownGene’ Flavor: r-oldrel-macos-x86_64

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [12s/28s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64