CRAN Package Check Results for Maintainer ‘Marc A. Suchard <msuchard at ucla.edu>’

Last updated on 2025-04-17 14:50:26 CEST.

Package	WARN	NOTE	OK
BeastJar	2	3	8
BrokenAdaptiveRidge		6	7
Cyclops		2	11
IterativeHardThresholding		6	7
MultiBD		13
RcppXsimd		13

Package BeastJar

Current CRAN status: WARN: 2, NOTE: 3, OK: 8

Version: 1.10.6
Check: whether startup messages can be suppressed
Result: NOTE OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used. It looks like this package (or a package it requires) has a startup message which cannot be suppressed: see ?packageStartupMessage. Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.10.6
Check: dependencies in R code
Result: NOTE OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used. Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.10.6
Check: S3 generic/method consistency
Result: WARN OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used. See section 'Generic functions and methods' in the 'Writing R Extensions' manual. Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.10.6
Check: replacement functions
Result: WARN OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used. The argument of a replacement function which corresponds to the right hand side must be named 'value'. Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.10.6
Check: foreign function calls
Result: NOTE OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used. See chapter 'System and foreign language interfaces' in the 'Writing R Extensions' manual. Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.10.6
Check: R code for possible problems
Result: NOTE OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used. Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.10.6
Check: for missing documentation entries
Result: WARN OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used. All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.10.6
Check: for code/documentation mismatches
Result: WARN OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used. OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used. OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used. Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.10.6
Check: Rd \usage sections
Result: NOTE OpenJDK 64-Bit Server VM warning: The Windows job object has enabled multiple processor groups (2) but the UseAllWindowsProcessorGroups flag is off. Some processors might not be used. The \usage entries for S3 methods should use the \method markup and not their full name. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.10.6
Check: installed package size
Result: NOTE installed size is 7.8Mb sub-directories of 1Mb or more: java 7.7Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.10.6
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package BrokenAdaptiveRidge

Current CRAN status: NOTE: 6, OK: 7

Version: 1.0.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: createBarPrior.Rd: fitCyclopsModel createFastBarPrior.Rd: fitCyclopsModel Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package Cyclops

Current CRAN status: NOTE: 2, OK: 11

Version: 3.5.1
Check: installed package size
Result: NOTE installed size is 28.9Mb sub-directories of 1Mb or more: libs 28.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package IterativeHardThresholding

Current CRAN status: NOTE: 6, OK: 7

Version: 1.0.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: createFastIhtPrior.Rd: fitCyclopsModel createIhtPrior.Rd: fitCyclopsModel Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package MultiBD

Current CRAN status: NOTE: 13

Additional issues

Intel

Version: 0.2.0
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.2.0
Check: compiled code
Result: NOTE File ‘MultiBD/libs/MultiBD.so’: Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’ It is good practice to register native routines and to disable symbol search. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.0
Check: installed package size
Result: NOTE installed size is 6.1Mb sub-directories of 1Mb or more: libs 4.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package RcppXsimd

Current CRAN status: NOTE: 13

Version: 7.1.6
Check: C++ specification
Result: NOTE Specified C++14: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64