CRAN Package Check Results for Maintainer ‘Aidan Morales <moral169 at msu.edu>’

Last updated on 2025-12-28 01:49:16 CET.

Package	ERROR	NOTE	OK
rTwig	1	6	6

Package rTwig

Current CRAN status: ERROR: 1, NOTE: 6, OK: 6

Additional issues

M1mac

Version: 1.4.0
Check: compiled code
Result: NOTE File ‘rTwig/libs/rTwig.so’: Found non-API call to R: ‘ATTRIB’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.4.0
Check: compiled code
Result: NOTE File 'rTwig/libs/x64/rTwig.dll': Found non-API call to R: 'ATTRIB' Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual, and section 'Moving into C API compliance' for issues with the use of non-API entry points. Flavor: r-devel-windows-x86_64

Version: 1.4.0
Check: examples
Result: ERROR Running examples in 'rTwig-Ex.R' failed The error most likely occurred in: > ### Name: cluster_cloud > ### Title: Cluster Cloud > ### Aliases: cluster_cloud > > ### ** Examples > > > ## Load Data > file <- system.file("extdata/QSM.mat", package = "rTwig") > file2 <- system.file("extdata/cloud.txt", package = "rTwig") > > qsm <- run_rtwig(file, twig_radius = 4.23, metrics = FALSE) Importing TreeQSM Updating Cylinder Ordering Calculating Total Children Building Cylinder Network Caching Network Verifying Topology Calculating Growth Length Calculating Reverse Branch Order Error in `[.data.table`(~.df, , `:=`(c("depth", "reverseBranchOrder"), : attempt access index 4/4 in VECTOR_ELT Calls: run_rtwig ... mutate -> mutate.tidytable -> eval_tidy -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 1.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Box-Dimension.Rmd' using rmarkdown --- finished re-building 'Box-Dimension.Rmd' --- re-building 'Dictionary.Rmd' using rmarkdown --- finished re-building 'Dictionary.Rmd' --- re-building 'Metrics.Rmd' using rmarkdown Quitting from Metrics.Rmd:41-50 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 4/4 in VECTOR_ELT --- Backtrace: ▆ 1. ├─rTwig::run_rtwig(file, twig_radius = 4.23, metrics = FALSE) 2. │ └─rTwig::update_cylinders(cylinder) 3. │ └─rTwig:::reverse_branch_order(...) 4. │ └─... %>% rename({{ id }} := "id") 5. ├─tidytable::rename(...) 6. ├─tidytable::summarise(...) 7. ├─tidytable::group_by(., "id") 8. ├─tidytable::mutate(...) 9. ├─tidytable:::mutate.grouped_tt(...) 10. │ ├─tidytable::mutate(...) 11. │ └─tidytable:::mutate.tidytable(...) 12. │ └─rlang::eval_tidy(dt_expr, .df, dt_env) 13. ├─...[] 14. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Metrics.Rmd' failed with diagnostics: attempt access index 4/4 in VECTOR_ELT --- failed re-building 'Metrics.Rmd' --- re-building 'Overview.Rmd' using rmarkdown Quitting from Overview.Rmd:141-147 [unnamed-chunk-12] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 4/4 in VECTOR_ELT --- Backtrace: ▆ 1. ├─rTwig::update_cylinders(cylinder) 2. │ └─rTwig:::reverse_branch_order(...) 3. │ └─... %>% rename({{ id }} := "id") 4. ├─tidytable::rename(...) 5. ├─tidytable::summarise(...) 6. ├─tidytable::group_by(., "id") 7. ├─tidytable::mutate(...) 8. ├─tidytable:::mutate.grouped_tt(...) 9. │ ├─tidytable::mutate(...) 10. │ └─tidytable:::mutate.tidytable(...) 11. │ └─rlang::eval_tidy(dt_expr, .df, dt_env) 12. ├─...[] 13. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Overview.Rmd' failed with diagnostics: attempt access index 4/4 in VECTOR_ELT --- failed re-building 'Overview.Rmd' --- re-building 'Twigs.Rmd' using rmarkdown --- finished re-building 'Twigs.Rmd' --- re-building 'Validation.Rmd' using rmarkdown --- finished re-building 'Validation.Rmd' SUMMARY: processing the following files failed: 'Metrics.Rmd' 'Overview.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64

Version: 1.4.0
Check: installed package size
Result: NOTE installed size is 7.6Mb sub-directories of 1Mb or more: extdata 1.0Mb libs 5.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64