CRAN Package Check Results for Maintainer ‘Marian Eberl <marian.eberl at tum.de>’

Last updated on 2025-12-28 05:50:32 CET.

Package	ERROR	OK
msSPChelpR	1	12

Package msSPChelpR

Current CRAN status: ERROR: 1, OK: 12

Version: 0.9.1
Check: examples
Result: ERROR Running examples in 'msSPChelpR-Ex.R' failed The error most likely occurred in: > ### Name: renumber_time_id_tt > ### Title: Renumber the time ID per case (i.e. Tumor sequence) - tidytable > ### version > ### Aliases: renumber_time_id_tt > > ### ** Examples > > > data(us_second_cancer) > us_second_cancer %>% + #only select first 10000 rows so example runs faster + dplyr::slice(1:10000) %>% + msSPChelpR::renumber_time_id_tt(new_time_id_var = "t_tumid", + dattype = "seer", + case_id_var = "fake_id") Error in `[.data.table`(~.df, , `:=`(t_tumid = as.integer(seq_len(.N))), : attempt access index 16/16 in VECTOR_ELT Calls: %>% ... <Anonymous> -> mutate.tidytable -> eval_tidy -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 0.9.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'introduction.Rmd' using rmarkdown Quitting from introduction.Rmd:236-258 [unnamed-chunk-10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 11/11 in VECTOR_ELT --- Backtrace: ▆ 1. ├─usdata_wide %>% ... 2. ├─msSPChelpR::sir_byfutime(...) 3. │ └─... %>% tidytable::filter(n > 1) 4. ├─tidytable::filter(., n > 1) 5. ├─tidytable::add_count(...) 6. ├─tidytable:::add_count.tidytable(...) 7. │ ├─tidytable::mutate(.df, `:=`(!!name, n()), .by = c(!!!.by)) 8. │ └─tidytable:::mutate.tidytable(.df, `:=`(!!name, n()), .by = c(!!!.by)) 9. │ └─rlang::eval_tidy(dt_expr, .df, dt_env) 10. ├─.df[, `:=`(n = .N), by = `<chr>`, keyby = FALSE] 11. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'introduction.Rmd' failed with diagnostics: attempt access index 11/11 in VECTOR_ELT --- failed re-building 'introduction.Rmd' SUMMARY: processing the following file failed: 'introduction.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64