The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Last updated on 2026-04-17 11:54:28 CEST.
| Package | ERROR | OK |
|---|---|---|
| PACVr | 5 | 9 |
Current CRAN status: ERROR: 5, OK: 9
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/125s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(PACVr)
>
> test_check("PACVr")
Saving _problems/test-PACVr-9.R
Warning: stack imbalance in '<-', 123 then 125
Warning: stack imbalance in '{', 119 then 121
Warning: stack imbalance in '{', 112 then 114
Warning: stack imbalance in '<-', 105 then 107
Warning: stack imbalance in 'withVisible', 99 then 101
Warning: stack imbalance in '<-', 88 then 90
Warning: stack imbalance in '{', 84 then 86
Saving _problems/test-readingOps-50.R
Saving _problems/test-readingOps-50.R
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 27 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-PACVr.R:9:5'): successful run of `Mitochondrial_Genome.R` ──────
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. ├─base::suppressMessages(source(usageFileFull)) at test-PACVr.R:9:5
2. │ └─base::withCallingHandlers(...)
3. ├─base::source(usageFileFull)
4. │ ├─base::withVisible(eval(ei, envir))
5. │ └─base::eval(ei, envir)
6. │ └─base::eval(ei, envir)
7. └─PACVr::PACVr.complete(...)
8. └─GBKData$new(gbkFile, analysisSpecs)
9. └─PACVr (local) initialize(...)
10. └─PACVr:::PACVr.read.gb(gbkFile)
11. └─PACVr:::read.gbWithHandling(gbkRaw)
12. └─base::tryCatch(...)
13. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. └─value[[3L]](cond)
16. └─PACVr:::read.gbOnFix(gbkRaw, count)
17. └─PACVr:::fixGbkChar(gbkRaw)
18. └─base::writeLines(gbkCharFixed, gbkFileFixed)
19. └─base::file(con, "w")
── Error ('test-readingOps.R:50:5'): successful parsing of `MG936619/MG936619.gb` ──
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─PACVr:::PACVr.read.gb(gbkFileFull) at test-readingOps.R:50:5
2. └─PACVr:::read.gbWithHandling(gbkRaw)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─value[[3L]](cond)
7. └─PACVr:::read.gbOnFix(gbkRaw, count)
8. └─PACVr:::fixGbkChar(gbkRaw)
9. └─base::writeLines(gbkCharFixed, gbkFileFixed)
10. └─base::file(con, "w")
── Error ('test-readingOps.R:50:5'): successful parsing of `MG936619/MG936619.gb` ──
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─PACVr:::PACVr.read.gb(gbkFileFull) at test-readingOps.R:50:5
2. └─PACVr:::read.gbWithHandling(gbkRaw)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─value[[3L]](cond)
7. └─PACVr:::read.gbOnFix(gbkRaw, count)
8. └─PACVr:::fixGbkChar(gbkRaw)
9. └─base::writeLines(gbkCharFixed, gbkFileFixed)
10. └─base::file(con, "w")
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 27 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [69s/86s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(PACVr)
>
> test_check("PACVr")
Saving _problems/test-PACVr-9.R
Warning: stack imbalance in '<-', 123 then 125
Warning: stack imbalance in '{', 119 then 121
Warning: stack imbalance in '{', 112 then 114
Warning: stack imbalance in '<-', 105 then 107
Warning: stack imbalance in 'withVisible', 99 then 101
Warning: stack imbalance in '<-', 88 then 90
Warning: stack imbalance in '{', 84 then 86
Saving _problems/test-readingOps-50.R
Saving _problems/test-readingOps-50.R
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 27 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-PACVr.R:9:5'): successful run of `Mitochondrial_Genome.R` ──────
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. ├─base::suppressMessages(source(usageFileFull)) at test-PACVr.R:9:5
2. │ └─base::withCallingHandlers(...)
3. ├─base::source(usageFileFull)
4. │ ├─base::withVisible(eval(ei, envir))
5. │ └─base::eval(ei, envir)
6. │ └─base::eval(ei, envir)
7. └─PACVr::PACVr.complete(...)
8. └─GBKData$new(gbkFile, analysisSpecs)
9. └─PACVr (local) initialize(...)
10. └─PACVr:::PACVr.read.gb(gbkFile)
11. └─PACVr:::read.gbWithHandling(gbkRaw)
12. └─base::tryCatch(...)
13. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. └─value[[3L]](cond)
16. └─PACVr:::read.gbOnFix(gbkRaw, count)
17. └─PACVr:::fixGbkChar(gbkRaw)
18. └─base::writeLines(gbkCharFixed, gbkFileFixed)
19. └─base::file(con, "w")
── Error ('test-readingOps.R:50:5'): successful parsing of `MG936619/MG936619.gb` ──
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─PACVr:::PACVr.read.gb(gbkFileFull) at test-readingOps.R:50:5
2. └─PACVr:::read.gbWithHandling(gbkRaw)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─value[[3L]](cond)
7. └─PACVr:::read.gbOnFix(gbkRaw, count)
8. └─PACVr:::fixGbkChar(gbkRaw)
9. └─base::writeLines(gbkCharFixed, gbkFileFixed)
10. └─base::file(con, "w")
── Error ('test-readingOps.R:50:5'): successful parsing of `MG936619/MG936619.gb` ──
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─PACVr:::PACVr.read.gb(gbkFileFull) at test-readingOps.R:50:5
2. └─PACVr:::read.gbWithHandling(gbkRaw)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─value[[3L]](cond)
7. └─PACVr:::read.gbOnFix(gbkRaw, count)
8. └─PACVr:::fixGbkChar(gbkRaw)
9. └─base::writeLines(gbkCharFixed, gbkFileFixed)
10. └─base::file(con, "w")
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 27 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [98s/130s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(PACVr)
>
> test_check("PACVr")
Saving _problems/test-PACVr-9.R
Warning: stack imbalance in '<-', 123 then 125
Warning: stack imbalance in '{', 119 then 121
Warning: stack imbalance in '{', 112 then 114
Warning: stack imbalance in '<-', 105 then 107
Warning: stack imbalance in 'withVisible', 99 then 101
Warning: stack imbalance in '<-', 88 then 90
Warning: stack imbalance in '{', 84 then 86
Saving _problems/test-readingOps-50.R
Saving _problems/test-readingOps-50.R
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 27 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-PACVr.R:9:5'): successful run of `Mitochondrial_Genome.R` ──────
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. ├─base::suppressMessages(source(usageFileFull)) at test-PACVr.R:9:5
2. │ └─base::withCallingHandlers(...)
3. ├─base::source(usageFileFull)
4. │ ├─base::withVisible(eval(ei, envir))
5. │ └─base::eval(ei, envir)
6. │ └─base::eval(ei, envir)
7. └─PACVr::PACVr.complete(...)
8. └─GBKData$new(gbkFile, analysisSpecs)
9. └─PACVr (local) initialize(...)
10. └─PACVr:::PACVr.read.gb(gbkFile)
11. └─PACVr:::read.gbWithHandling(gbkRaw)
12. └─base::tryCatch(...)
13. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. └─value[[3L]](cond)
16. └─PACVr:::read.gbOnFix(gbkRaw, count)
17. └─PACVr:::fixGbkChar(gbkRaw)
18. └─base::writeLines(gbkCharFixed, gbkFileFixed)
19. └─base::file(con, "w")
── Error ('test-readingOps.R:50:5'): successful parsing of `MG936619/MG936619.gb` ──
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─PACVr:::PACVr.read.gb(gbkFileFull) at test-readingOps.R:50:5
2. └─PACVr:::read.gbWithHandling(gbkRaw)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─value[[3L]](cond)
7. └─PACVr:::read.gbOnFix(gbkRaw, count)
8. └─PACVr:::fixGbkChar(gbkRaw)
9. └─base::writeLines(gbkCharFixed, gbkFileFixed)
10. └─base::file(con, "w")
── Error ('test-readingOps.R:50:5'): successful parsing of `MG936619/MG936619.gb` ──
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─PACVr:::PACVr.read.gb(gbkFileFull) at test-readingOps.R:50:5
2. └─PACVr:::read.gbWithHandling(gbkRaw)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─value[[3L]](cond)
7. └─PACVr:::read.gbOnFix(gbkRaw, count)
8. └─PACVr:::fixGbkChar(gbkRaw)
9. └─base::writeLines(gbkCharFixed, gbkFileFixed)
10. └─base::file(con, "w")
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 27 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [100s/129s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(PACVr)
>
> test_check("PACVr")
Saving _problems/test-PACVr-9.R
Warning: stack imbalance in '<-', 123 then 125
Warning: stack imbalance in '{', 119 then 121
Warning: stack imbalance in '{', 112 then 114
Warning: stack imbalance in '<-', 105 then 107
Warning: stack imbalance in 'withVisible', 99 then 101
Warning: stack imbalance in '<-', 88 then 90
Warning: stack imbalance in '{', 84 then 86
Saving _problems/test-readingOps-50.R
Saving _problems/test-readingOps-50.R
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 27 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-PACVr.R:9:5'): successful run of `Mitochondrial_Genome.R` ──────
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. ├─base::suppressMessages(source(usageFileFull)) at test-PACVr.R:9:5
2. │ └─base::withCallingHandlers(...)
3. ├─base::source(usageFileFull)
4. │ ├─base::withVisible(eval(ei, envir))
5. │ └─base::eval(ei, envir)
6. │ └─base::eval(ei, envir)
7. └─PACVr::PACVr.complete(...)
8. └─GBKData$new(gbkFile, analysisSpecs)
9. └─PACVr (local) initialize(...)
10. └─PACVr:::PACVr.read.gb(gbkFile)
11. └─PACVr:::read.gbWithHandling(gbkRaw)
12. └─base::tryCatch(...)
13. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
14. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
15. └─value[[3L]](cond)
16. └─PACVr:::read.gbOnFix(gbkRaw, count)
17. └─PACVr:::fixGbkChar(gbkRaw)
18. └─base::writeLines(gbkCharFixed, gbkFileFixed)
19. └─base::file(con, "w")
── Error ('test-readingOps.R:50:5'): successful parsing of `MG936619/MG936619.gb` ──
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─PACVr:::PACVr.read.gb(gbkFileFull) at test-readingOps.R:50:5
2. └─PACVr:::read.gbWithHandling(gbkRaw)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─value[[3L]](cond)
7. └─PACVr:::read.gbOnFix(gbkRaw, count)
8. └─PACVr:::fixGbkChar(gbkRaw)
9. └─base::writeLines(gbkCharFixed, gbkFileFixed)
10. └─base::file(con, "w")
── Error ('test-readingOps.R:50:5'): successful parsing of `MG936619/MG936619.gb` ──
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─PACVr:::PACVr.read.gb(gbkFileFull) at test-readingOps.R:50:5
2. └─PACVr:::read.gbWithHandling(gbkRaw)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─value[[3L]](cond)
7. └─PACVr:::read.gbOnFix(gbkRaw, count)
8. └─PACVr:::fixGbkChar(gbkRaw)
9. └─base::writeLines(gbkCharFixed, gbkFileFixed)
10. └─base::file(con, "w")
[ FAIL 3 | WARN 3 | SKIP 0 | PASS 27 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.1.4
Check: package dependencies
Result: ERROR
Package required but not available: ‘pwalign’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.