CRAN Package Check Results for Maintainer ‘Mathieu Laversanne <laversannem at iarc.who.int>’

Last updated on 2025-12-28 03:52:08 CET.

Package	ERROR	OK
Rcan	1	12

Package Rcan

Current CRAN status: ERROR: 1, OK: 12

Version: 1.3.92
Check: examples
Result: ERROR Running examples in 'Rcan-Ex.R' failed The error most likely occurred in: > ### Name: ICD_group_CI5 > ### Title: ICD10 group detailed example > ### Aliases: ICD_group_CI5 > ### Keywords: datasets > > ### ** Examples > > > > data(ICD_group_CI5) > data(data_individual_file) > > #group individual data by > # 5 year age group > # ICd grouping from dataframe ICD_group_CI5 > > df_data_icd <- csu_group_cases(data_individual_file, + var_age="age", + group_by=c("sex", "regcode", "reglabel"), + df_ICD = ICD_group_CI5, + var_ICD ="site") Warning in csu_group_cases(data_individual_file, var_age = "age", group_by = c("sex", : Warning: 60 cases have age value > 150 and will be considered as unknown age Error in `[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data)) : attempt access index 8/8 in VECTOR_ELT Calls: csu_group_cases -> core.csu_group_cases -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 1.3.92
Check: tests
Result: ERROR Running 'testthat.R' [5s] Running the tests in 'tests/testthat.R' failed. Complete output: > > > library(testthat) > test_check("Rcan") Loading required package: Rcan Type example(Rcan) to see demo of the function. Saving _problems/test-Rcan-13.R Saving _problems/test-Rcan-34.R Population with less than 18 age group: registry_label nb_age_group <fctr> <num> India, Chennai (Madras) 16 South Australia 17 ASR have been computed for the age group 0-99+ Cumulative risk have been computed for the age group 0-74 ASR have been computed for the age group 0-99+ Saving _problems/test-Rcan-122.R Population with less than 18 age group: registry_label year nb_age_group <fctr> <int> <num> Brazil, Goiania 1988 17 Brazil, Goiania 1989 17 Brazil, Goiania 1990 17 Brazil, Goiania 1991 17 Brazil, Goiania 1992 17 --- --- --- USA, Georgia, Atlanta: Black 2003 17 USA, Georgia, Atlanta: Black 2004 17 USA, Georgia, Atlanta: Black 2005 17 USA, Georgia, Atlanta: Black 2006 17 USA, Georgia, Atlanta: Black 2007 17 ASR have been computed for the age group 0-99+ Saving _problems/test-Rcan-149.R [ FAIL 4 | WARN 3 | SKIP 0 | PASS 3 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-Rcan.R:9:3'): Test csu_group_cases: 1 ────────────────────────── Error in ``[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data))`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─Rcan::csu_group_cases(...) at test-Rcan.R:9:3 2. └─Rcan:::core.csu_group_cases(...) 3. ├─dt_data[, `:=`(group_id, .GRP), by = key(dt_data)] 4. └─data.table:::`[.data.table`(...) ── Error ('test-Rcan.R:29:3'): Test csu_merge_cases_pop: 1 ───────────────────── Error in ``[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data))`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─Rcan::csu_group_cases(...) at test-Rcan.R:29:3 2. └─Rcan:::core.csu_group_cases(...) 3. ├─dt_data[, `:=`(group_id, .GRP), by = key(dt_data)] 4. └─data.table:::`[.data.table`(...) ── Error ('test-Rcan.R:120:3'): Test trend: 1 ────────────────────────────────── Error in ``[.data.table`(dt_data, , `:=`(CSU_smooth, loess(CSU_T ~ CSU_Y, span = smoothing)$fitted), by = CSU_BY)`: attempt access index 7/7 in VECTOR_ELT Backtrace: ▆ 1. └─Rcan::csu_time_trend(...) at test-Rcan.R:120:3 2. └─Rcan:::core.csu_time_trend(...) 3. ├─...[] 4. └─data.table:::`[.data.table`(...) ── Error ('test-Rcan.R:147:3'): Test eapc: 1 ─────────────────────────────────── Error in ``[.data.table`(dt_data, , `:=`(id_group, .GRP), by = group_by)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─Rcan::csu_eapc(...) at test-Rcan.R:147:3 2. └─Rcan:::core.csu_eapc(...) 3. ├─dt_data[, `:=`(id_group, .GRP), by = group_by] 4. └─data.table:::`[.data.table`(...) [ FAIL 4 | WARN 3 | SKIP 0 | PASS 3 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64