CRAN Package Check Results for Maintainer ‘Laure Cougnaud <laure.cougnaud at openanalytics.eu>’

Last updated on 2025-12-28 01:49:13 CET.

Package	ERROR	NOTE	OK
clinDataReview		3	10
clinUtils	1	3	9
inTextSummaryTable		3	10
mpm			13
nlcv	1		12
patientProfilesVis		3	10

Package clinDataReview

Current CRAN status: NOTE: 3, OK: 10

Version: 1.6.2
Check: installed package size
Result: NOTE installed size is 5.7Mb sub-directories of 1Mb or more: doc 4.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package clinUtils

Current CRAN status: ERROR: 1, NOTE: 3, OK: 9

Version: 0.2.2
Check: examples
Result: ERROR Running examples in 'clinUtils-Ex.R' failed The error most likely occurred in: > ### Name: compareTables > ### Title: Compare tables > ### Aliases: compareTables > > ### ** Examples > > ## Example 1 > # In this case the referenceVar 'a' is the same > # the comparison highlights only as change in the variables 'c' and 'd' > newData <- data.frame( + "a" = c(1, 2, 3, 4), + "b" = c(5, 6, 7, 8), + "c" = rep(1, 4), + "d" = rep(2, 4) + ) > oldData <- data.frame( + "a" = c(1, 2, 3, 4), + "b" = c(3, 4, 7, 8), + "c" = rep(2, 4), + "d" = rep(1, 4) + ) > compareTables( + newData = newData, + oldData = oldData, + referenceVars = "a", + changeableVars = c("c", "d") + ) Error in `[.data.table`(diffDataDetailed, , `:=`((colsDiff), { : attempt access index 5/5 in VECTOR_ELT Calls: compareTables ... exportDiffData -> formatDetailsComparison -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 0.2.2
Check: tests
Result: ERROR Running 'testthat.R' [15s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(clinUtils) > > test_check("clinUtils") Saving _problems/test_compareTables-121.R [ FAIL 6 | WARN 1 | SKIP 2 | PASS 289 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test_getClinDT.R:838:7', 'test_getClinDT.R:855:7' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_compareTables.R:118:7'): When reference columns are not specified, all columns are used as the reference ── Error in ``[.data.table`(diffDataDetailed, , `:=`((colsDiff), { if (all(`Comparison type` == "Addition")) { as.list(rep("+", length(cols))) } else if (all(`Comparison type` == "Removal")) { as.list(rep("-", length(cols))) } else { lapply(.SD, function(x) { ifelse(uniqueN(x) == 1, "==", "!=") }) } }), .SDcols = cols, by = referenceVars)`: attempt access index 5/5 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test_compareTables.R:118:7 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─clinUtils::compareTables(newData, oldData) 5. └─clinUtils::exportDiffData(...) 6. └─clinUtils:::formatDetailsComparison(...) 7. ├─...[] 8. └─data.table:::`[.data.table`(...) ── Error ('test_compareTables.R:266:7'): The difference dataset is exported correctly to an interactive table ── Error in ``[.data.table`(diffDataDetailed, , `:=`((colsDiff), { if (all(`Comparison type` == "Addition")) { as.list(rep("+", length(cols))) } else if (all(`Comparison type` == "Removal")) { as.list(rep("-", length(cols))) } else { lapply(.SD, function(x) { ifelse(uniqueN(x) == 1, "==", "!=") }) } }), .SDcols = cols, by = referenceVars)`: attempt access index 5/5 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_silent(res <- exportDiffData(diffData)) at test_compareTables.R:266:7 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─clinUtils::exportDiffData(diffData) 10. └─clinUtils:::formatDetailsComparison(...) 11. ├─...[] 12. └─data.table:::`[.data.table`(...) ── Error ('test_compareTables.R:292:7'): The merged product of the difference dataset and new dataset is exported correctly to an interactive table ── Error in ``[.data.table`(diffDataDetailed, , `:=`((colsDiff), { if (all(`Comparison type` == "Addition")) { as.list(rep("+", length(cols))) } else if (all(`Comparison type` == "Removal")) { as.list(rep("-", length(cols))) } else { lapply(.SD, function(x) { ifelse(uniqueN(x) == 1, "==", "!=") }) } }), .SDcols = cols, by = referenceVars)`: attempt access index 5/5 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_silent(res <- exportDiffData(diffData, newDataDiff = newDataDiff)) at test_compareTables.R:292:7 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─clinUtils::exportDiffData(diffData, newDataDiff = newDataDiff) 10. └─clinUtils:::formatDetailsComparison(...) 11. ├─...[] 12. └─data.table:::`[.data.table`(...) ── Error ('test_compareTables.R:316:7'): The merged product of the difference dataset and old dataset is exported correctly to an interactive table ── Error in ``[.data.table`(diffDataDetailed, , `:=`((colsDiff), { if (all(`Comparison type` == "Addition")) { as.list(rep("+", length(cols))) } else if (all(`Comparison type` == "Removal")) { as.list(rep("-", length(cols))) } else { lapply(.SD, function(x) { ifelse(uniqueN(x) == 1, "==", "!=") }) } }), .SDcols = cols, by = referenceVars)`: attempt access index 5/5 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_silent(...) at test_compareTables.R:316:7 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─clinUtils::compareTables(...) 10. └─clinUtils::exportDiffData(...) 11. └─clinUtils:::formatDetailsComparison(...) 12. ├─...[] 13. └─data.table:::`[.data.table`(...) ── Error ('test_compareTables.R:357:7'): A placeholder is displayed in the interactive table if there is no difference between the new and old data ── Error in ``[.data.table`(diffDataDetailed, , `:=`((colsDiff), { if (all(`Comparison type` == "Addition")) { as.list(rep("+", length(cols))) } else if (all(`Comparison type` == "Removal")) { as.list(rep("-", length(cols))) } else { lapply(.SD, function(x) { ifelse(uniqueN(x) == 1, "==", "!=") }) } }), .SDcols = cols, by = referenceVars)`: attempt access index 3/3 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_silent(res <- exportDiffData(diffData)) at test_compareTables.R:357:7 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─clinUtils::exportDiffData(diffData) 10. └─clinUtils:::formatDetailsComparison(...) 11. ├─...[] 12. └─data.table:::`[.data.table`(...) ── Error ('test_compareTables.R:378:7'): Column names are renamed correctly in the interactive difference data table ── Error in ``[.data.table`(diffDataDetailed, , `:=`((colsDiff), { if (all(`Comparison type` == "Addition")) { as.list(rep("+", length(cols))) } else if (all(`Comparison type` == "Removal")) { as.list(rep("-", length(cols))) } else { lapply(.SD, function(x) { ifelse(uniqueN(x) == 1, "==", "!=") }) } }), .SDcols = cols, by = referenceVars)`: attempt access index 5/5 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_silent(...) at test_compareTables.R:378:7 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─clinUtils::exportDiffData(...) 10. └─clinUtils:::formatDetailsComparison(...) 11. ├─...[] 12. └─data.table:::`[.data.table`(...) [ FAIL 6 | WARN 1 | SKIP 2 | PASS 289 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'clinUtils-vignette.Rmd' using rmarkdown Quitting from clinUtils-vignette.Rmd:339-366 [compareTables] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 8/8 in VECTOR_ELT --- Backtrace: ▆ 1. └─clinUtils::compareTables(...) 2. └─clinUtils::exportDiffData(...) 3. └─clinUtils:::formatDetailsComparison(...) 4. ├─...[] 5. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'clinUtils-vignette.Rmd' failed with diagnostics: attempt access index 8/8 in VECTOR_ELT --- failed re-building 'clinUtils-vignette.Rmd' SUMMARY: processing the following file failed: 'clinUtils-vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64

Version: 0.2.2
Check: installed package size
Result: NOTE installed size is 7.7Mb sub-directories of 1Mb or more: doc 6.6Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package inTextSummaryTable

Current CRAN status: NOTE: 3, OK: 10

Version: 3.3.5
Check: installed package size
Result: NOTE installed size is 10.3Mb sub-directories of 1Mb or more: doc 9.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package mpm

Current CRAN status: OK: 13

Package nlcv

Current CRAN status: ERROR: 1, OK: 12

Version: 0.3.6
Check: package dependencies
Result: ERROR Package required but not available: ‘MLInterfaces’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-release-macos-x86_64

Package patientProfilesVis

Current CRAN status: NOTE: 3, OK: 10

Version: 2.0.10
Check: installed package size
Result: NOTE installed size is 7.1Mb sub-directories of 1Mb or more: doc 6.7Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64