CRAN Package Check Results for Maintainer ‘Kenneth Tay <kjytay at gmail.com>’

Last updated on 2025-06-04 15:50:01 CEST.

Package	ERROR	OK
cvwrapr	4	9

Package cvwrapr

Current CRAN status: ERROR: 4, OK: 9

Version: 1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [18s/24s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(cvwrapr) > > test_check("cvwrapr") Loading required package: Matrix Loaded glmnet 4.1-9 Attaching package: 'glmnet' The following object is masked from 'package:cvwrapr': coxnet.deviance Loading required package: foreach Loading required package: iterators [ FAIL 14 | WARN 0 | SKIP 0 | PASS 348 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvm doesn't match not equal to new_fit$cvm. 46/46 mismatches (average diff: 0.0134) [1] 5.71 - 5.72 == -0.0113 [2] 5.67 - 5.68 == -0.0126 [3] 5.61 - 5.63 == -0.0134 [4] 5.56 - 5.57 == -0.0135 [5] 5.51 - 5.53 == -0.0134 [6] 5.47 - 5.49 == -0.0133 [7] 5.44 - 5.45 == -0.0133 [8] 5.42 - 5.43 == -0.0132 [9] 5.40 - 5.41 == -0.0133 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvm, new_fit$cvm, label = "cvm doesn't match") at tests/testthat/setup.R:27:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvsd doesn't match not equal to new_fit$cvsd. 46/46 mismatches (average diff: 0.0508) [1] 0.249 - 0.403 == -0.1533 [2] 0.243 - 0.409 == -0.1654 [3] 0.244 - 0.403 == -0.1589 [4] 0.249 - 0.390 == -0.1408 [5] 0.255 - 0.376 == -0.1203 [6] 0.260 - 0.363 == -0.1028 [7] 0.265 - 0.353 == -0.0878 [8] 0.269 - 0.344 == -0.0750 [9] 0.273 - 0.336 == -0.0632 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvsd, new_fit$cvsd, label = "cvsd doesn't match") at tests/testthat/setup.R:29:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvup doesn't match not equal to new_fit$cvup. 46/46 mismatches (average diff: 0.0504) [1] 5.96 - 6.12 == -0.1646 [2] 5.91 - 6.09 == -0.1781 [3] 5.86 - 6.03 == -0.1723 [4] 5.81 - 5.96 == -0.1543 [5] 5.77 - 5.90 == -0.1337 [6] 5.73 - 5.85 == -0.1161 [7] 5.71 - 5.81 == -0.1011 [8] 5.68 - 5.77 == -0.0882 [9] 5.67 - 5.74 == -0.0765 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvup, new_fit$cvup, label = "cvup doesn't match") at tests/testthat/setup.R:31:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvlo doesn't match not equal to new_fit$cvlo. 46/46 mismatches (average diff: 0.0547) [1] 5.46 - 5.32 == 0.1420 [2] 5.43 - 5.27 == 0.1528 [3] 5.37 - 5.23 == 0.1456 [4] 5.31 - 5.18 == 0.1273 [5] 5.26 - 5.15 == 0.1069 [6] 5.21 - 5.12 == 0.0894 [7] 5.18 - 5.10 == 0.0745 [8] 5.15 - 5.09 == 0.0617 [9] 5.12 - 5.07 == 0.0499 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvlo, new_fit$cvlo, label = "cvlo doesn't match") at tests/testthat/setup.R:33:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── fit.preval doesn't match not equal to new_fit$fit.preval. Attributes: < Component "cvraw": Mean relative difference: 0.3317 > Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:39:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── lambda.1se doesn't match not equal to new_fit$lambda.1se. 1/1 mismatches [1] 0.261 - 0.287 == -0.0255 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:43:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── index doesn't match not equal to new_fit$index. 1/2 mismatches [2] 3 - 2 == 1 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$index, new_fit$index, label = "index doesn't match") at tests/testthat/setup.R:45:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvm doesn't match not equal to new_fit$cvm. 46/46 mismatches (average diff: 0.0341) [1] 2.54 - 2.51 == 0.0242 [2] 2.50 - 2.48 == 0.0230 [3] 2.45 - 2.43 == 0.0228 [4] 2.40 - 2.38 == 0.0234 [5] 2.36 - 2.34 == 0.0244 [6] 2.33 - 2.30 == 0.0252 [7] 2.30 - 2.27 == 0.0259 [8] 2.27 - 2.25 == 0.0265 [9] 2.26 - 2.23 == 0.0272 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvm, new_fit$cvm, label = "cvm doesn't match") at tests/testthat/setup.R:27:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvsd doesn't match not equal to new_fit$cvsd. 46/46 mismatches (average diff: 0.123) [1] 0.182 - 0.166 == 0.01574 [2] 0.177 - 0.172 == 0.00504 [3] 0.175 - 0.167 == 0.00870 [4] 0.178 - 0.156 == 0.02187 [5] 0.183 - 0.146 == 0.03718 [6] 0.187 - 0.137 == 0.05018 [7] 0.191 - 0.130 == 0.06122 [8] 0.195 - 0.124 == 0.07074 [9] 0.199 - 0.120 == 0.07944 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvsd, new_fit$cvsd, label = "cvsd doesn't match") at tests/testthat/setup.R:29:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvup doesn't match not equal to new_fit$cvup. 46/46 mismatches (average diff: 0.157) [1] 2.72 - 2.68 == 0.0399 [2] 2.68 - 2.65 == 0.0280 [3] 2.63 - 2.60 == 0.0315 [4] 2.58 - 2.54 == 0.0453 [5] 2.54 - 2.48 == 0.0615 [6] 2.51 - 2.44 == 0.0754 [7] 2.49 - 2.40 == 0.0871 [8] 2.47 - 2.37 == 0.0973 [9] 2.46 - 2.35 == 0.1066 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvup, new_fit$cvup, label = "cvup doesn't match") at tests/testthat/setup.R:31:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvlo doesn't match not equal to new_fit$cvlo. 46/46 mismatches (average diff: 0.0908) [1] 2.36 - 2.35 == 0.00841 [2] 2.32 - 2.31 == 0.01792 [3] 2.28 - 2.26 == 0.01408 [4] 2.23 - 2.22 == 0.00157 [5] 2.18 - 2.19 == -0.01282 [6] 2.14 - 2.16 == -0.02501 [7] 2.11 - 2.14 == -0.03534 [8] 2.08 - 2.12 == -0.04421 [9] 2.06 - 2.11 == -0.05225 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvlo, new_fit$cvlo, label = "cvlo doesn't match") at tests/testthat/setup.R:33:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── fit.preval doesn't match not equal to new_fit$fit.preval. Attributes: < Component "cvraw": Mean relative difference: 0.3433054 > Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:39:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── lambda.1se doesn't match not equal to new_fit$lambda.1se. 1/1 mismatches [1] 0.238 - 0.197 == 0.0404 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:43:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── index doesn't match not equal to new_fit$index. 1/2 mismatches [2] 4 - 6 == -2 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$index, new_fit$index, label = "index doesn't match") at tests/testthat/setup.R:45:3 [ FAIL 14 | WARN 0 | SKIP 0 | PASS 348 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [53s/161s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(cvwrapr) > > test_check("cvwrapr") Loading required package: Matrix Loaded glmnet 4.1-9 Attaching package: 'glmnet' The following object is masked from 'package:cvwrapr': coxnet.deviance Loading required package: foreach Loading required package: iterators [ FAIL 14 | WARN 0 | SKIP 0 | PASS 348 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvm doesn't match not equal to new_fit$cvm. 46/46 mismatches (average diff: 0.0134) [1] 5.71 - 5.72 == -0.0113 [2] 5.67 - 5.68 == -0.0126 [3] 5.61 - 5.63 == -0.0134 [4] 5.56 - 5.57 == -0.0135 [5] 5.51 - 5.53 == -0.0134 [6] 5.47 - 5.49 == -0.0133 [7] 5.44 - 5.45 == -0.0133 [8] 5.42 - 5.43 == -0.0132 [9] 5.40 - 5.41 == -0.0133 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvm, new_fit$cvm, label = "cvm doesn't match") at tests/testthat/setup.R:27:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvsd doesn't match not equal to new_fit$cvsd. 46/46 mismatches (average diff: 0.0508) [1] 0.249 - 0.403 == -0.1533 [2] 0.243 - 0.409 == -0.1654 [3] 0.244 - 0.403 == -0.1589 [4] 0.249 - 0.390 == -0.1408 [5] 0.255 - 0.376 == -0.1203 [6] 0.260 - 0.363 == -0.1028 [7] 0.265 - 0.353 == -0.0878 [8] 0.269 - 0.344 == -0.0750 [9] 0.273 - 0.336 == -0.0632 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvsd, new_fit$cvsd, label = "cvsd doesn't match") at tests/testthat/setup.R:29:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvup doesn't match not equal to new_fit$cvup. 46/46 mismatches (average diff: 0.0504) [1] 5.96 - 6.12 == -0.1646 [2] 5.91 - 6.09 == -0.1781 [3] 5.86 - 6.03 == -0.1723 [4] 5.81 - 5.96 == -0.1543 [5] 5.77 - 5.90 == -0.1337 [6] 5.73 - 5.85 == -0.1161 [7] 5.71 - 5.81 == -0.1011 [8] 5.68 - 5.77 == -0.0882 [9] 5.67 - 5.74 == -0.0765 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvup, new_fit$cvup, label = "cvup doesn't match") at tests/testthat/setup.R:31:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvlo doesn't match not equal to new_fit$cvlo. 46/46 mismatches (average diff: 0.0547) [1] 5.46 - 5.32 == 0.1420 [2] 5.43 - 5.27 == 0.1528 [3] 5.37 - 5.23 == 0.1456 [4] 5.31 - 5.18 == 0.1273 [5] 5.26 - 5.15 == 0.1069 [6] 5.21 - 5.12 == 0.0894 [7] 5.18 - 5.10 == 0.0745 [8] 5.15 - 5.09 == 0.0617 [9] 5.12 - 5.07 == 0.0499 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvlo, new_fit$cvlo, label = "cvlo doesn't match") at tests/testthat/setup.R:33:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── fit.preval doesn't match not equal to new_fit$fit.preval. Attributes: < Component "cvraw": Mean relative difference: 0.3317 > Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:39:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── lambda.1se doesn't match not equal to new_fit$lambda.1se. 1/1 mismatches [1] 0.261 - 0.287 == -0.0255 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:43:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── index doesn't match not equal to new_fit$index. 1/2 mismatches [2] 3 - 2 == 1 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$index, new_fit$index, label = "index doesn't match") at tests/testthat/setup.R:45:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvm doesn't match not equal to new_fit$cvm. 46/46 mismatches (average diff: 0.0341) [1] 2.54 - 2.51 == 0.0242 [2] 2.50 - 2.48 == 0.0230 [3] 2.45 - 2.43 == 0.0228 [4] 2.40 - 2.38 == 0.0234 [5] 2.36 - 2.34 == 0.0244 [6] 2.33 - 2.30 == 0.0252 [7] 2.30 - 2.27 == 0.0259 [8] 2.27 - 2.25 == 0.0265 [9] 2.26 - 2.23 == 0.0272 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvm, new_fit$cvm, label = "cvm doesn't match") at tests/testthat/setup.R:27:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvsd doesn't match not equal to new_fit$cvsd. 46/46 mismatches (average diff: 0.123) [1] 0.182 - 0.166 == 0.01574 [2] 0.177 - 0.172 == 0.00504 [3] 0.175 - 0.167 == 0.00870 [4] 0.178 - 0.156 == 0.02187 [5] 0.183 - 0.146 == 0.03718 [6] 0.187 - 0.137 == 0.05018 [7] 0.191 - 0.130 == 0.06122 [8] 0.195 - 0.124 == 0.07074 [9] 0.199 - 0.120 == 0.07944 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvsd, new_fit$cvsd, label = "cvsd doesn't match") at tests/testthat/setup.R:29:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvup doesn't match not equal to new_fit$cvup. 46/46 mismatches (average diff: 0.157) [1] 2.72 - 2.68 == 0.0399 [2] 2.68 - 2.65 == 0.0280 [3] 2.63 - 2.60 == 0.0315 [4] 2.58 - 2.54 == 0.0453 [5] 2.54 - 2.48 == 0.0615 [6] 2.51 - 2.44 == 0.0754 [7] 2.49 - 2.40 == 0.0871 [8] 2.47 - 2.37 == 0.0973 [9] 2.46 - 2.35 == 0.1066 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvup, new_fit$cvup, label = "cvup doesn't match") at tests/testthat/setup.R:31:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvlo doesn't match not equal to new_fit$cvlo. 46/46 mismatches (average diff: 0.0908) [1] 2.36 - 2.35 == 0.00841 [2] 2.32 - 2.31 == 0.01792 [3] 2.28 - 2.26 == 0.01408 [4] 2.23 - 2.22 == 0.00157 [5] 2.18 - 2.19 == -0.01282 [6] 2.14 - 2.16 == -0.02501 [7] 2.11 - 2.14 == -0.03534 [8] 2.08 - 2.12 == -0.04421 [9] 2.06 - 2.11 == -0.05225 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvlo, new_fit$cvlo, label = "cvlo doesn't match") at tests/testthat/setup.R:33:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── fit.preval doesn't match not equal to new_fit$fit.preval. Attributes: < Component "cvraw": Mean relative difference: 0.3433054 > Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:39:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── lambda.1se doesn't match not equal to new_fit$lambda.1se. 1/1 mismatches [1] 0.238 - 0.197 == 0.0404 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:43:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── index doesn't match not equal to new_fit$index. 1/2 mismatches [2] 4 - 6 == -2 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$index, new_fit$index, label = "index doesn't match") at tests/testthat/setup.R:45:3 [ FAIL 14 | WARN 0 | SKIP 0 | PASS 348 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [49s/231s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(cvwrapr) > > test_check("cvwrapr") Loading required package: Matrix Loaded glmnet 4.1-9 Attaching package: 'glmnet' The following object is masked from 'package:cvwrapr': coxnet.deviance Loading required package: foreach Loading required package: iterators [ FAIL 14 | WARN 0 | SKIP 0 | PASS 348 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvm doesn't match not equal to new_fit$cvm. 46/46 mismatches (average diff: 0.0134) [1] 5.71 - 5.72 == -0.0113 [2] 5.67 - 5.68 == -0.0126 [3] 5.61 - 5.63 == -0.0134 [4] 5.56 - 5.57 == -0.0135 [5] 5.51 - 5.53 == -0.0134 [6] 5.47 - 5.49 == -0.0133 [7] 5.44 - 5.45 == -0.0133 [8] 5.42 - 5.43 == -0.0132 [9] 5.40 - 5.41 == -0.0133 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvm, new_fit$cvm, label = "cvm doesn't match") at tests/testthat/setup.R:27:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvsd doesn't match not equal to new_fit$cvsd. 46/46 mismatches (average diff: 0.0508) [1] 0.249 - 0.403 == -0.1533 [2] 0.243 - 0.409 == -0.1654 [3] 0.244 - 0.403 == -0.1589 [4] 0.249 - 0.390 == -0.1408 [5] 0.255 - 0.376 == -0.1203 [6] 0.260 - 0.363 == -0.1028 [7] 0.265 - 0.353 == -0.0878 [8] 0.269 - 0.344 == -0.0750 [9] 0.273 - 0.336 == -0.0632 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvsd, new_fit$cvsd, label = "cvsd doesn't match") at tests/testthat/setup.R:29:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvup doesn't match not equal to new_fit$cvup. 46/46 mismatches (average diff: 0.0504) [1] 5.96 - 6.12 == -0.1646 [2] 5.91 - 6.09 == -0.1781 [3] 5.86 - 6.03 == -0.1723 [4] 5.81 - 5.96 == -0.1543 [5] 5.77 - 5.90 == -0.1337 [6] 5.73 - 5.85 == -0.1161 [7] 5.71 - 5.81 == -0.1011 [8] 5.68 - 5.77 == -0.0882 [9] 5.67 - 5.74 == -0.0765 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvup, new_fit$cvup, label = "cvup doesn't match") at tests/testthat/setup.R:31:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvlo doesn't match not equal to new_fit$cvlo. 46/46 mismatches (average diff: 0.0547) [1] 5.46 - 5.32 == 0.1420 [2] 5.43 - 5.27 == 0.1528 [3] 5.37 - 5.23 == 0.1456 [4] 5.31 - 5.18 == 0.1273 [5] 5.26 - 5.15 == 0.1069 [6] 5.21 - 5.12 == 0.0894 [7] 5.18 - 5.10 == 0.0745 [8] 5.15 - 5.09 == 0.0617 [9] 5.12 - 5.07 == 0.0499 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvlo, new_fit$cvlo, label = "cvlo doesn't match") at tests/testthat/setup.R:33:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── fit.preval doesn't match not equal to new_fit$fit.preval. Attributes: < Component "cvraw": Mean relative difference: 0.3317 > Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:39:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── lambda.1se doesn't match not equal to new_fit$lambda.1se. 1/1 mismatches [1] 0.261 - 0.287 == -0.0255 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:43:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── index doesn't match not equal to new_fit$index. 1/2 mismatches [2] 3 - 2 == 1 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$index, new_fit$index, label = "index doesn't match") at tests/testthat/setup.R:45:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvm doesn't match not equal to new_fit$cvm. 46/46 mismatches (average diff: 0.0341) [1] 2.54 - 2.51 == 0.0242 [2] 2.50 - 2.48 == 0.0230 [3] 2.45 - 2.43 == 0.0228 [4] 2.40 - 2.38 == 0.0234 [5] 2.36 - 2.34 == 0.0244 [6] 2.33 - 2.30 == 0.0252 [7] 2.30 - 2.27 == 0.0259 [8] 2.27 - 2.25 == 0.0265 [9] 2.26 - 2.23 == 0.0272 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvm, new_fit$cvm, label = "cvm doesn't match") at tests/testthat/setup.R:27:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvsd doesn't match not equal to new_fit$cvsd. 46/46 mismatches (average diff: 0.123) [1] 0.182 - 0.166 == 0.01574 [2] 0.177 - 0.172 == 0.00504 [3] 0.175 - 0.167 == 0.00870 [4] 0.178 - 0.156 == 0.02187 [5] 0.183 - 0.146 == 0.03718 [6] 0.187 - 0.137 == 0.05018 [7] 0.191 - 0.130 == 0.06122 [8] 0.195 - 0.124 == 0.07074 [9] 0.199 - 0.120 == 0.07944 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvsd, new_fit$cvsd, label = "cvsd doesn't match") at tests/testthat/setup.R:29:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvup doesn't match not equal to new_fit$cvup. 46/46 mismatches (average diff: 0.157) [1] 2.72 - 2.68 == 0.0399 [2] 2.68 - 2.65 == 0.0280 [3] 2.63 - 2.60 == 0.0315 [4] 2.58 - 2.54 == 0.0453 [5] 2.54 - 2.48 == 0.0615 [6] 2.51 - 2.44 == 0.0754 [7] 2.49 - 2.40 == 0.0871 [8] 2.47 - 2.37 == 0.0973 [9] 2.46 - 2.35 == 0.1066 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvup, new_fit$cvup, label = "cvup doesn't match") at tests/testthat/setup.R:31:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvlo doesn't match not equal to new_fit$cvlo. 46/46 mismatches (average diff: 0.0908) [1] 2.36 - 2.35 == 0.00841 [2] 2.32 - 2.31 == 0.01792 [3] 2.28 - 2.26 == 0.01408 [4] 2.23 - 2.22 == 0.00157 [5] 2.18 - 2.19 == -0.01282 [6] 2.14 - 2.16 == -0.02501 [7] 2.11 - 2.14 == -0.03534 [8] 2.08 - 2.12 == -0.04421 [9] 2.06 - 2.11 == -0.05225 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvlo, new_fit$cvlo, label = "cvlo doesn't match") at tests/testthat/setup.R:33:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── fit.preval doesn't match not equal to new_fit$fit.preval. Attributes: < Component "cvraw": Mean relative difference: 0.3433054 > Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:39:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── lambda.1se doesn't match not equal to new_fit$lambda.1se. 1/1 mismatches [1] 0.238 - 0.197 == 0.0404 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(...) at tests/testthat/setup.R:43:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── index doesn't match not equal to new_fit$index. 1/2 mismatches [2] 4 - 6 == -2 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$index, new_fit$index, label = "index doesn't match") at tests/testthat/setup.R:45:3 [ FAIL 14 | WARN 0 | SKIP 0 | PASS 348 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: tests
Result: ERROR Running 'testthat.R' [24s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(cvwrapr) > > test_check("cvwrapr") Loading required package: Matrix Loaded glmnet 4.1-9 Attaching package: 'glmnet' The following object is masked from 'package:cvwrapr': coxnet.deviance Loading required package: foreach Loading required package: iterators [ FAIL 14 | WARN 0 | SKIP 0 | PASS 348 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvm doesn't match not equal to new_fit$cvm. 46/46 mismatches (average diff: 0.0134) [1] 5.71 - 5.72 == -0.0113 [2] 5.67 - 5.68 == -0.0126 [3] 5.61 - 5.63 == -0.0134 [4] 5.56 - 5.57 == -0.0135 [5] 5.51 - 5.53 == -0.0134 [6] 5.47 - 5.49 == -0.0133 [7] 5.44 - 5.45 == -0.0133 [8] 5.42 - 5.43 == -0.0132 [9] 5.40 - 5.41 == -0.0133 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvm, new_fit$cvm, label = "cvm doesn't match") at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:27:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvsd doesn't match not equal to new_fit$cvsd. 46/46 mismatches (average diff: 0.0508) [1] 0.249 - 0.403 == -0.1533 [2] 0.243 - 0.409 == -0.1654 [3] 0.244 - 0.403 == -0.1589 [4] 0.249 - 0.390 == -0.1408 [5] 0.255 - 0.376 == -0.1203 [6] 0.260 - 0.363 == -0.1028 [7] 0.265 - 0.353 == -0.0878 [8] 0.269 - 0.344 == -0.0750 [9] 0.273 - 0.336 == -0.0632 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvsd, new_fit$cvsd, label = "cvsd doesn't match") at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:29:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvup doesn't match not equal to new_fit$cvup. 46/46 mismatches (average diff: 0.0504) [1] 5.96 - 6.12 == -0.1646 [2] 5.91 - 6.09 == -0.1781 [3] 5.86 - 6.03 == -0.1723 [4] 5.81 - 5.96 == -0.1543 [5] 5.77 - 5.90 == -0.1337 [6] 5.73 - 5.85 == -0.1161 [7] 5.71 - 5.81 == -0.1011 [8] 5.68 - 5.77 == -0.0882 [9] 5.67 - 5.74 == -0.0765 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvup, new_fit$cvup, label = "cvup doesn't match") at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:31:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── cvlo doesn't match not equal to new_fit$cvlo. 46/46 mismatches (average diff: 0.0547) [1] 5.46 - 5.32 == 0.1420 [2] 5.43 - 5.27 == 0.1528 [3] 5.37 - 5.23 == 0.1456 [4] 5.31 - 5.18 == 0.1273 [5] 5.26 - 5.15 == 0.1069 [6] 5.21 - 5.12 == 0.0894 [7] 5.18 - 5.10 == 0.0745 [8] 5.15 - 5.09 == 0.0617 [9] 5.12 - 5.07 == 0.0499 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$cvlo, new_fit$cvlo, label = "cvlo doesn't match") at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:33:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── fit.preval doesn't match not equal to new_fit$fit.preval. Attributes: < Component "cvraw": Mean relative difference: 0.3317 > Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(...) at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:39:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── lambda.1se doesn't match not equal to new_fit$lambda.1se. 1/1 mismatches [1] 0.261 - 0.287 == -0.0255 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(...) at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:43:3 ── Failure ('test-kfoldcv-glmnet-family.R:179:3'): glmnet cox-deviance ───────── index doesn't match not equal to new_fit$index. 1/2 mismatches [2] 3 - 2 == 1 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:179:3 2. └─testthat::expect_equal(target_fit$index, new_fit$index, label = "index doesn't match") at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:45:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvm doesn't match not equal to new_fit$cvm. 46/46 mismatches (average diff: 0.0341) [1] 2.54 - 2.51 == 0.0242 [2] 2.50 - 2.48 == 0.0230 [3] 2.45 - 2.43 == 0.0228 [4] 2.40 - 2.38 == 0.0234 [5] 2.36 - 2.34 == 0.0244 [6] 2.33 - 2.30 == 0.0252 [7] 2.30 - 2.27 == 0.0259 [8] 2.27 - 2.25 == 0.0265 [9] 2.26 - 2.23 == 0.0272 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvm, new_fit$cvm, label = "cvm doesn't match") at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:27:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvsd doesn't match not equal to new_fit$cvsd. 46/46 mismatches (average diff: 0.123) [1] 0.182 - 0.166 == 0.01574 [2] 0.177 - 0.172 == 0.00504 [3] 0.175 - 0.167 == 0.00870 [4] 0.178 - 0.156 == 0.02187 [5] 0.183 - 0.146 == 0.03718 [6] 0.187 - 0.137 == 0.05018 [7] 0.191 - 0.130 == 0.06122 [8] 0.195 - 0.124 == 0.07074 [9] 0.199 - 0.120 == 0.07944 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvsd, new_fit$cvsd, label = "cvsd doesn't match") at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:29:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvup doesn't match not equal to new_fit$cvup. 46/46 mismatches (average diff: 0.157) [1] 2.72 - 2.68 == 0.0399 [2] 2.68 - 2.65 == 0.0280 [3] 2.63 - 2.60 == 0.0315 [4] 2.58 - 2.54 == 0.0453 [5] 2.54 - 2.48 == 0.0615 [6] 2.51 - 2.44 == 0.0754 [7] 2.49 - 2.40 == 0.0871 [8] 2.47 - 2.37 == 0.0973 [9] 2.46 - 2.35 == 0.1066 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvup, new_fit$cvup, label = "cvup doesn't match") at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:31:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── cvlo doesn't match not equal to new_fit$cvlo. 46/46 mismatches (average diff: 0.0908) [1] 2.36 - 2.35 == 0.00841 [2] 2.32 - 2.31 == 0.01792 [3] 2.28 - 2.26 == 0.01408 [4] 2.23 - 2.22 == 0.00157 [5] 2.18 - 2.19 == -0.01282 [6] 2.14 - 2.16 == -0.02501 [7] 2.11 - 2.14 == -0.03534 [8] 2.08 - 2.12 == -0.04421 [9] 2.06 - 2.11 == -0.05225 ... Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$cvlo, new_fit$cvlo, label = "cvlo doesn't match") at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:33:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── fit.preval doesn't match not equal to new_fit$fit.preval. Attributes: < Component "cvraw": Mean relative difference: 0.3433054 > Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(...) at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:39:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── lambda.1se doesn't match not equal to new_fit$lambda.1se. 1/1 mismatches [1] 0.238 - 0.197 == 0.0404 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(...) at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:43:3 ── Failure ('test-kfoldcv-glmnet-family.R:193:3'): glmnet cox-deviance, grouped = FALSE ── index doesn't match not equal to new_fit$index. 1/2 mismatches [2] 4 - 6 == -2 Backtrace: ▆ 1. └─cvwrapr:::compare_glmnet_fits(target_fit, cv_fit, family = "cox") at test-kfoldcv-glmnet-family.R:193:3 2. └─testthat::expect_equal(target_fit$index, new_fit$index, label = "index doesn't match") at D:\RCompile\CRANpkg\local\4.6\cvwrapr.Rcheck\tests\testthat\setup.R:45:3 [ FAIL 14 | WARN 0 | SKIP 0 | PASS 348 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64