CRAN Package Check Results for Maintainer ‘Katherine Kirkby <kirkbyk at who.int>’

Last updated on 2025-12-28 01:49:13 CET.

Package	ERROR	OK
healthequal	1	12

Package healthequal

Current CRAN status: ERROR: 1, OK: 12

Version: 1.0.1
Check: examples
Result: ERROR Running examples in 'healthequal-Ex.R' failed The error most likely occurred in: > ### Name: rii > ### Title: Relative index of inequality (RII) > ### Aliases: rii > > ### ** Examples > > # example code 1 > data(IndividualSample) > head(IndividualSample) id psu strata weight subgroup subgroup_order sba dtp3 1 1 88 1 0.351672 Quintile 3 3 1 NA 2 2 1337 38 0.431545 Quintile 1 (poorest) 1 1 1 3 3 450 18 0.482483 Quintile 2 2 1 NA 4 4 1692 56 0.407390 Quintile 1 (poorest) 1 0 NA 5 5 752 23 1.547062 Quintile 5 (richest) 5 1 NA 6 6 1033 30 2.429523 Quintile 5 (richest) 5 1 NA favourable_indicator indicator_scale 1 1 100 2 1 100 3 1 100 4 1 100 5 1 100 6 1 100 > with(IndividualSample, + rii(est = sba, + subgroup_order = subgroup_order, + weight = weight, + psu = psu, + strata = strata)) measure estimate se lowerci upperci 1 rii 2.038107 0.03503773 1.902842 2.182987 > # example code 2 > data(OrderedSample) > head(OrderedSample) indicator 1 Births attended by skilled health personnel (%) 2 Births attended by skilled health personnel (%) 3 Births attended by skilled health personnel (%) 4 Births attended by skilled health personnel (%) 5 Births attended by skilled health personnel (%) dimension subgroup subgroup_order 1 Economic status (wealth quintile) Quintile 1 (poorest) 1 2 Economic status (wealth quintile) Quintile 2 2 3 Economic status (wealth quintile) Quintile 3 3 4 Economic status (wealth quintile) Quintile 4 4 5 Economic status (wealth quintile) Quintile 5 (richest) 5 estimate se population setting_average favourable_indicator 1 75.60530 1.5996131 2072.436 91.59669 1 2 91.01997 1.1351504 2112.204 91.59669 1 3 96.03959 0.6461946 1983.059 91.59669 1 4 97.04223 0.5676206 2052.124 91.59669 1 5 99.22405 0.2237683 1884.510 91.59669 1 ordered_dimension indicator_scale 1 1 100 2 1 100 3 1 100 4 1 100 5 1 100 > with(OrderedSample, + rii(est = estimate, + subgroup_order = subgroup_order, + pop = population)) Error in `[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp) : attempt access index 13/13 in VECTOR_ELT Calls: with ... <Anonymous> -> do.call -> get_comparisons -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 1.0.1
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [11s] Running the tests in 'tests/testthat.R' failed. Complete output: > > library(testthat) > library(healthequal) > > test_check("healthequal") Saving _problems/test-rii-19.R Saving _problems/test-sii-20.R [ FAIL 2 | WARN 8 | SKIP 0 | PASS 45 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-rii.R:17:3'): rii function calculates RII correctly ──────────── Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 13/13 in VECTOR_ELT Backtrace: ▆ 1. └─healthequal::rii(pop = pop, est = est, subgroup_order = subgroup_order) at test-rii.R:17:3 2. ├─marginaleffects::avg_comparisons(...) 3. │ └─base::eval.parent(call_attr) 4. │ └─base::eval(expr, p) 5. │ └─base::eval(expr, p) 6. └─marginaleffects::comparisons(...) 7. ├─base::do.call("get_comparisons", args) 8. └─marginaleffects:::get_comparisons(...) 9. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp] 10. └─data.table:::`[.data.table`(...) ── Error ('test-sii.R:17:3'): sii function calculates SII correctly ──────────── Error in ``[.data.table`(out, , `:=`(tmp_idx, seq_len(.N)), by = tmp)`: attempt access index 13/13 in VECTOR_ELT Backtrace: ▆ 1. └─healthequal::sii(...) at test-sii.R:17:3 2. ├─marginaleffects::avg_comparisons(...) 3. │ └─base::eval.parent(call_attr) 4. │ └─base::eval(expr, p) 5. │ └─base::eval(expr, p) 6. └─marginaleffects::comparisons(...) 7. ├─base::do.call("get_comparisons", args) 8. └─marginaleffects:::get_comparisons(...) 9. ├─out[, `:=`(tmp_idx, seq_len(.N)), by = tmp] 10. └─data.table:::`[.data.table`(...) [ FAIL 2 | WARN 8 | SKIP 0 | PASS 45 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64