CRAN Package Check Results for Maintainer ‘John Prybylski <jprybylski at gmail.com>’

Last updated on 2025-12-04 09:50:25 CET.

Package	ERROR	NOTE	OK
pmxcv			13
xpose.xtras	2	3	8

Package pmxcv

Current CRAN status: OK: 13

Package xpose.xtras

Current CRAN status: ERROR: 2, NOTE: 3, OK: 8

Version: 0.1.0
Check: examples
Result: ERROR Running examples in ‘xpose.xtras-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: backfill_nlmixr2_props > ### Title: Populate some properties from nlmixr2 fit > ### Aliases: backfill_nlmixr2_props > > ### ** Examples > > > xpdb_nlmixr2 %>% + set_prop(condn = "not implemented") %>% + get_prop("condn") [1] "not implemented" > > xpdb_nlmixr2 %>% + set_prop(condn = "not implemented") %>% + backfill_nlmixr2_props() %>% + get_prop("condn") Error: package "qs" needed for this function to work Execution halted Flavor: r-release-linux-x86_64

Version: 0.1.0
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [226s/254s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(xpose.xtras) ℹ xpose is not currently attached. Attaching package: 'xpose.xtras' The following object is masked from 'package:stats': filter > > test_check("xpose.xtras") Error : package "qs" needed for this function to work Saving _problems/test-nlmixr2-11.R Error : package "qs" needed for this function to work Saving _problems/test-nlmixr2-14.R Error : package "qs" needed for this function to work Saving _problems/test-nlmixr2-18.R [ FAIL 3 | WARN 8 | SKIP 9 | PASS 799 ] ══ Skipped tests (9) ═══════════════════════════════════════════════════════════ • On CRAN (7): 'test-covariates.R:123:3', 'test-xplot_boxplot.R:157:3', 'test-xplot_pairs.R:44:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3' • requireNamespace("rxode2", quietly = TRUE) && "rxDerived" %in% getNamespaceExports("rxode2") is TRUE (2): 'test-diag_constants.R:123:3', 'test-diag_constants.R:129:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-nlmixr2.R:9:3'): nlmixr2 is compatible ─────────────────────── Expected `nlmixr2_as_xtra(fit_example)` not to throw any errors. Actually got a <rlang_error> with message: No `nlmixr2` fit object found. Caused by error in `seq_len()`: ! argument must be coercible to non-negative integer ── Failure ('test-nlmixr2.R:12:3'): nlmixr2 is compatible ────────────────────── Expected `nlmixr2_as_xtra(fit_example, .skip_assoc = TRUE)` not to throw any errors. Actually got a <rlang_error> with message: No `nlmixr2` fit object found. Caused by error in `seq_len()`: ! argument must be coercible to non-negative integer ── Error ('test-nlmixr2.R:15:3'): nlmixr2 is compatible ──────────────────────── Error in `backfill_nlmixr2_props(.)`: No `nlmixr2` fit object found. Caused by error in `seq_len()`: ! argument must be coercible to non-negative integer Backtrace: ▆ 1. ├─testthat::expect_failure(...) at test-nlmixr2.R:15:3 2. │ └─testthat:::capture_success_failure(expr) 3. │ └─base::withCallingHandlers(...) 4. ├─testthat::expect_identical(...) 5. │ └─testthat::quasi_label(enquo(object), label) 6. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 7. ├─xpose.xtras::nlmixr2_as_xtra(fit_example) 8. │ ├─... %>% backfill_nlmixr2_props() 9. │ └─xpose.nlmixr2::xpose_data_nlmixr2(obj = obj, ...) 10. │ ├─obj$dataMergeInner 11. │ └─nlmixr2est:::`$.nlmixr2FitData`(obj, "dataMergeInner") 12. │ ├─nlmixr2est::nmObjGetData(.lst) 13. │ └─nlmixr2est:::nmObjGetData.dataMergeInner(.lst) 14. │ └─nlmixr2est:::.dataMergeStub(.obj, preferFit = FALSE) 15. ├─xpose.xtras::backfill_nlmixr2_props(.) 16. │ └─xpose.xtras:::assert_nlmixr2fit(xpdb) 17. │ ├─xpose.xtras:::xpa(...) 18. │ │ ├─rlang::try_fetch(...) 19. │ │ │ ├─base::tryCatch(...) 20. │ │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 21. │ │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 22. │ │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 23. │ │ │ └─base::withCallingHandlers(...) 24. │ │ └─rlang::exec(...) 25. │ └─xpose.xtras::test_nlmixr2_has_fit(xpdb) 26. │ └─xpose::check_xpdb(xpdb) 27. │ └─xpose::is.xpdb(xpdb) 28. ├─xpose.xtras:::mutate_files(...) 29. │ └─xpose::check_xpdb(xpdb) 30. │ └─xpose::is.xpdb(xpdb) 31. ├─xpose.xtras::set_prop(., file = mod_name) 32. │ └─xpose::get_summary(xpdb) 33. │ └─xpose::check_xpdb(xpdb, check = "summary") 34. │ └─xpose::is.xpdb(xpdb) 35. ├─xpose.xtras::as_xp_xtras(.) 36. │ └─xpose.xtras::as_xpdb_x(x) 37. │ └─base::structure(x, class = c("xp_xtras", "uneval")) 38. ├─xpose.xtras::attach_nlmixr2(., obj) 39. │ └─xpose::check_xpdb(xpdb) 40. │ └─xpose::is.xpdb(xpdb) 41. └─base::.handleSimpleError(...) 42. └─rlang (local) h(simpleError(msg, call)) 43. └─handlers[[1L]](cnd) 44. └─rlang::abort(...) [ FAIL 3 | WARN 8 | SKIP 9 | PASS 799 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

Version: 0.1.2
Check: whether package can be installed
Result: WARN Found the following significant warnings: Warning: namespace 'nlmixr2est' is not available and has been replaced Warning: namespace 'rxode2' is not available and has been replaced Flavor: r-release-windows-x86_64

Version: 0.1.2
Check: examples
Result: ERROR Running examples in 'xpose.xtras-Ex.R' failed The error most likely occurred in: > ### Name: backfill_nlmixr2_props > ### Title: Populate some properties from nlmixr2 fit > ### Aliases: backfill_nlmixr2_props > > ### ** Examples > > > xpdb_nlmixr2 %>% + set_prop(condn = "not implemented") %>% + get_prop("condn") [1] "not implemented" > > xpdb_nlmixr2 %>% + set_prop(condn = "not implemented") %>% + backfill_nlmixr2_props() %>% + get_prop("condn") Error in `backfill_nlmixr2_props()`: ! Incompatible nlmixr2/rxode2 fit object detected ℹ This object was created with rxode2 < 5.0 and cannot be used with rxode2 >= 5.0 ✖ The internal rxUi structure is incompatible between versions ! Please regenerate the fit object using current versions of nlmixr2est and rxode2 Backtrace: ▆ 1. ├─... %>% get_prop("condn") 2. ├─xpose.xtras::get_prop(., "condn") 3. │ └─xpose::get_summary(xpdb) 4. │ └─xpose::check_xpdb(xpdb, check = "summary") 5. │ └─xpose::is.xpdb(xpdb) 6. └─xpose.xtras::backfill_nlmixr2_props(.) 7. └─rlang::abort(...) Execution halted Flavor: r-release-windows-x86_64

Version: 0.1.2
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [246s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(xpose.xtras) ℹ xpose is not currently attached. Attaching package: 'xpose.xtras' The following object is masked from 'package:stats': filter > > test_check("xpose.xtras") Saving _problems/test-nlmixr2-10.R [ FAIL 1 | WARN 0 | SKIP 10 | PASS 847 ] ══ Skipped tests (10) ══════════════════════════════════════════════════════════ • On CRAN (7): 'test-covariates.R:123:3', 'test-xplot_boxplot.R:157:3', 'test-xplot_pairs.R:44:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3', 'test-xset_features.R:170:3' • requireNamespace("rxode2", quietly = TRUE) && "rxDerived" %in% getNamespaceExports("rxode2") is TRUE (2): 'test-diag_constants.R:123:3', 'test-diag_constants.R:129:3' • {qs} is not installed (1): 'test-nlmixr2.R:317:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-nlmixr2.R:8:3'): old fit detection works correctly ─────────── Expected `test_nlmixr2_is_old_fit(xpdb_nlmixr2)` to be FALSE. Differences: `actual`: TRUE `expected`: FALSE [ FAIL 1 | WARN 0 | SKIP 10 | PASS 847 ] Error: ! Test failures. Execution halted Flavor: r-release-windows-x86_64

Version: 0.1.2
Check: installed package size
Result: NOTE installed size is 9.5Mb sub-directories of 1Mb or more: data 3.4Mb doc 3.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64