CRAN Package Check Results for Maintainer ‘Joonas Miettinen <joonas.miettinen at cancer.fi>’

Last updated on 2026-01-21 01:49:22 CET.

Package	ERROR	OK
popEpi	6	7

Package popEpi

Current CRAN status: ERROR: 6, OK: 7

Version: 0.4.13
Check: tests
Result: ERROR Running ‘testthat.R’ [76s/100s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > > if (requireNamespace("testthat")) { + library("testthat") + library("popEpi") + library("data.table") + + using_r_devel <- grepl(pattern = "devel", x = R.version$status) + if (using_r_devel) { + ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm) + requireNamespace("data.table") + data.table::setDTthreads(threads = 1L) + } + + testthat::test_check("popEpi") + } Loading required namespace: testthat Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Saving _problems/test_Surv-18.R NOTE: entry.status has been set to "DM" for all. first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] ══ Skipped tests (41) ══════════════════════════════════════════════════════════ • Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3', 'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3', 'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3', 'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3', 'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5', 'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3', 'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3', 'test_splitting_randomly_on_fixed_data.R:9:3', 'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3', 'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3', 'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3', 'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5', 'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3', 'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3', 'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3', 'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3', 'test_weighter.R:99:3', 'test_weighter.R:122:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ── Expected `popepi_formals` to be identical to `survival_formals`. Differences: Component "type": target, current do not match when deparsed [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.4.13
Check: tests
Result: ERROR Running ‘testthat.R’ [53s/70s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > > if (requireNamespace("testthat")) { + library("testthat") + library("popEpi") + library("data.table") + + using_r_devel <- grepl(pattern = "devel", x = R.version$status) + if (using_r_devel) { + ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm) + requireNamespace("data.table") + data.table::setDTthreads(threads = 1L) + } + + testthat::test_check("popEpi") + } Loading required namespace: testthat Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Saving _problems/test_Surv-18.R NOTE: entry.status has been set to "DM" for all. first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] ══ Skipped tests (41) ══════════════════════════════════════════════════════════ • Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3', 'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3', 'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3', 'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3', 'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5', 'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3', 'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3', 'test_splitting_randomly_on_fixed_data.R:9:3', 'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3', 'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3', 'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3', 'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5', 'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3', 'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3', 'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3', 'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3', 'test_weighter.R:99:3', 'test_weighter.R:122:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ── Expected `popepi_formals` to be identical to `survival_formals`. Differences: Component "type": target, current do not match when deparsed [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.4.13
Check: tests
Result: ERROR Running ‘testthat.R’ [124s/180s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > > if (requireNamespace("testthat")) { + library("testthat") + library("popEpi") + library("data.table") + + using_r_devel <- grepl(pattern = "devel", x = R.version$status) + if (using_r_devel) { + ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm) + requireNamespace("data.table") + data.table::setDTthreads(threads = 1L) + } + + testthat::test_check("popEpi") + } Loading required namespace: testthat Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Saving _problems/test_Surv-18.R NOTE: entry.status has been set to "DM" for all. first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] ══ Skipped tests (41) ══════════════════════════════════════════════════════════ • Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3', 'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3', 'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3', 'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3', 'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5', 'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3', 'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3', 'test_splitting_randomly_on_fixed_data.R:9:3', 'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3', 'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3', 'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3', 'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5', 'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3', 'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3', 'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3', 'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3', 'test_weighter.R:99:3', 'test_weighter.R:122:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ── Expected `popepi_formals` to be identical to `survival_formals`. Differences: Component "type": target, current do not match when deparsed [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.4.13
Check: tests
Result: ERROR Running ‘testthat.R’ [133s/135s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > > if (requireNamespace("testthat")) { + library("testthat") + library("popEpi") + library("data.table") + + using_r_devel <- grepl(pattern = "devel", x = R.version$status) + if (using_r_devel) { + ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm) + requireNamespace("data.table") + data.table::setDTthreads(threads = 1L) + } + + testthat::test_check("popEpi") + } Loading required namespace: testthat Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Saving _problems/test_Surv-18.R NOTE: entry.status has been set to "DM" for all. first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] ══ Skipped tests (41) ══════════════════════════════════════════════════════════ • Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3', 'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3', 'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3', 'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3', 'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5', 'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3', 'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3', 'test_splitting_randomly_on_fixed_data.R:9:3', 'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3', 'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3', 'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3', 'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5', 'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3', 'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3', 'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3', 'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3', 'test_weighter.R:99:3', 'test_weighter.R:122:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ── Expected `popepi_formals` to be identical to `survival_formals`. Differences: Component "type": target, current do not match when deparsed [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.4.13
Check: tests
Result: ERROR Running ‘testthat.R’ [133s/143s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > > if (requireNamespace("testthat")) { + library("testthat") + library("popEpi") + library("data.table") + + using_r_devel <- grepl(pattern = "devel", x = R.version$status) + if (using_r_devel) { + ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm) + requireNamespace("data.table") + data.table::setDTthreads(threads = 1L) + } + + testthat::test_check("popEpi") + } Loading required namespace: testthat Saving _problems/test_Surv-18.R NOTE: entry.status has been set to "DM" for all. first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] ══ Skipped tests (41) ══════════════════════════════════════════════════════════ • Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3', 'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3', 'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3', 'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3', 'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5', 'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3', 'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3', 'test_splitting_randomly_on_fixed_data.R:9:3', 'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3', 'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3', 'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3', 'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5', 'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3', 'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3', 'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3', 'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3', 'test_weighter.R:99:3', 'test_weighter.R:122:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ── Expected `popepi_formals` to be identical to `survival_formals`. Differences: Component "type": target, current do not match when deparsed [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

Version: 0.4.13
Check: tests
Result: ERROR Running 'testthat.R' [101s] Running the tests in 'tests/testthat.R' failed. Complete output: > > if (requireNamespace("testthat")) { + library("testthat") + library("popEpi") + library("data.table") + + using_r_devel <- grepl(pattern = "devel", x = R.version$status) + if (using_r_devel) { + ## memory leak problem in data.table 1.11.2 in R-devel (3.6.0 atm) + requireNamespace("data.table") + data.table::setDTthreads(threads = 1L) + } + + testthat::test_check("popEpi") + } Loading required namespace: testthat Saving _problems/test_Surv-18.R NOTE: entry.status has been set to "DM" for all. first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <num> 1: 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN Key: <agegr> agegr first.bad.surv.int last.bad.surv.int surv.obs <int> <int> <int> <num> 1: 3 61 120 NaN [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] ══ Skipped tests (41) ══════════════════════════════════════════════════════════ • Unit tests skipped normally (41): 'test_aggre.R:162:3', 'test_aggre.R:199:3', 'test_expo.R:4:3', 'test_lexpand.R:5:3', 'test_lexpand.R:29:3', 'test_lexpand.R:59:3', 'test_lexpand.R:78:3', 'test_lexpand.R:99:3', 'test_lexpand.R:137:3', 'test_lexpand.R:213:3', 'test_lexpand.R:249:3', 'test_lexpand.R:342:3', 'test_relpois_mean_curve.R:4:3', 'test_sir.R:221:5', 'test_sir.R:257:3', 'test_splitLexisDT.R:4:3', 'test_splitMulti.R:9:3', 'test_splitting_breaks.R:5:3', 'test_splitting_breaks.R:39:3', 'test_splitting_randomly_on_fixed_data.R:9:3', 'test_splitting_randomly_on_random_data.R:9:3', 'test_survmean.R:6:3', 'test_survmean.R:76:3', 'test_survmean.R:117:3', 'test_survmean.R:166:3', 'test_survmean.R:265:3', 'test_survtab_adjusted.R:4:3', 'test_survtab_observed.R:67:3', 'test_survtab_relative.R:81:5', 'test_survtab_usage.R:6:3', 'test_survtab_usage.R:121:3', 'test_survtab_usage.R:198:3', 'test_survtab_usage.R:432:3', 'test_utils.R:4:3', 'test_utils.R:27:3', 'test_utils.R:138:3', 'test_utils.R:179:3', 'test_weighter.R:5:3', 'test_weighter.R:47:3', 'test_weighter.R:99:3', 'test_weighter.R:122:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_Surv.R:15:3'): survival::Surv and popEpi::Surv's formals are in harmony ── Expected `popepi_formals` to be identical to `survival_formals`. Differences: Component "type": target, current do not match when deparsed [ FAIL 1 | WARN 0 | SKIP 41 | PASS 270 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64