CRAN Package Check Results for Maintainer ‘Justin M. McGrath <jmcgrath at illinois.edu>’

Last updated on 2025-12-04 07:51:44 CET.

Package	WARN	NOTE
BioCro	5	8

Package BioCro

Current CRAN status: WARN: 5, NOTE: 8

Additional issues

rchk

Version: 3.2.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: ../src/inc/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'iterator<boost::numeric::ublas::sparse_bidirectional_iterator_tag, double>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::packed_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations] See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BioCro.Rcheck/00install.out’ for details. * used C++ compiler: ‘Debian clang version 21.1.6 (2)’ Flavor: r-devel-linux-x86_64-debian-clang

Version: 3.2.0
Check: C++ specification
Result: NOTE Specified C++11: support will be removed soon Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 3.2.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: ../src/inc/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/BioCro.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.2.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: ../src/inc/boost/numeric/ublas/storage.hpp:79:30: warning: 'construct' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:79:30: warning: 'construct<unsigned long, unsigned long>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::dense_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:152:40: warning: 'construct' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:152:40: warning: 'construct<double, double &>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:158:40: warning: 'construct' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:158:40: warning: 'construct<double, double &>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:162:40: warning: 'construct' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:162:40: warning: 'construct<double, const double &>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:177:40: warning: 'construct' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:177:40: warning: 'construct<double, double>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:193:36: warning: 'destroy' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:79:30: warning: 'construct<double, double>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:152:40: warning: 'construct<unsigned long, unsigned long &>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:158:40: warning: 'construct<unsigned long, unsigned long &>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:162:40: warning: 'construct<unsigned long, const unsigned long &>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/storage.hpp:177:40: warning: 'construct<unsigned long, unsigned long>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'iterator<boost::numeric::ublas::sparse_bidirectional_iterator_tag, double>' is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'iterator<boost::numeric::ublas::packed_random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations] See ‘/data/gannet/ripley/R/packages/tests-clang/BioCro.Rcheck/00install.out’ for details. * used C++ compiler: ‘clang version 21.1.6’ Flavor: r-devel-linux-x86_64-fedora-clang

Version: 3.2.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: ../src/inc/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] See ‘/data/gannet/ripley/R/packages/tests-devel/BioCro.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 3.2.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: ../src/inc/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] ../src/inc/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/BioCro.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’ Flavor: r-patched-linux-x86_64

Version: 3.2.0
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 3.2.0
Check: installed package size
Result: NOTE installed size is 19.6Mb sub-directories of 1Mb or more: data 2.0Mb libs 17.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 3.2.0
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64