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CRAN Package Check Results for Maintainer ‘Jari Haukka <jari.haukka at helsinki.fi>’

Last updated on 2026-04-17 11:54:24 CEST.

Package ERROR NOTE OK
codeCollection 14
cohorttools 3 11
shinyPredict 5 9

Package codeCollection

Current CRAN status: OK: 14

Package cohorttools

Current CRAN status: ERROR: 3, OK: 11

Version: 0.1.7
Check: examples
Result: ERROR Running examples in ‘cohorttools-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: boxesLx > ### Title: Boxes plot summarizing Lexis object > ### Aliases: boxesLx > > ### ** Examples > > library(DiagrammeR) > library(survival) > library(Epi) > library(mstate) Attaching package: ‘mstate’ The following objects are masked from ‘package:Epi’: absorbing, paths > data(ebmt3) > bmt <- Lexis(exit = list(tft = rfstime/365.25), + exit.status = factor(rfsstat, labels = c("Tx", "RD")), + data = ebmt3) NOTE: entry.status has been set to "Tx" for all. NOTE: entry is assumed to be 0 on the tft timescale. > bmtr <- cutLexis(bmt, cut = bmt$prtime/365.25, precursor.states = "Tx", + new.state = "PR") > > summary(bmtr) Transitions: To From Tx PR RD Records: Events: Risk time: Persons: Tx 577 1169 458 2204 1627 2439.43 2204 PR 0 786 383 1169 383 3173.03 1169 Sum 577 1955 841 3373 2010 5612.46 2204 > kk<-boxesLx(bmtr) Error in lv.1$Transitions[1:lv.len, " Persons:"] : subscript out of bounds Calls: boxesLx Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.7
Check: examples
Result: ERROR Running examples in ‘cohorttools-Ex.R’ failed The error most likely occurred in: > ### Name: boxesLx > ### Title: Boxes plot summarizing Lexis object > ### Aliases: boxesLx > > ### ** Examples > > library(DiagrammeR) > library(survival) > library(Epi) > library(mstate) Attaching package: ‘mstate’ The following objects are masked from ‘package:Epi’: absorbing, paths > data(ebmt3) > bmt <- Lexis(exit = list(tft = rfstime/365.25), + exit.status = factor(rfsstat, labels = c("Tx", "RD")), + data = ebmt3) NOTE: entry.status has been set to "Tx" for all. NOTE: entry is assumed to be 0 on the tft timescale. > bmtr <- cutLexis(bmt, cut = bmt$prtime/365.25, precursor.states = "Tx", + new.state = "PR") > > summary(bmtr) Transitions: To From Tx PR RD Records: Events: Risk time: Persons: Tx 577 1169 458 2204 1627 2439.43 2204 PR 0 786 383 1169 383 3173.03 1169 Sum 577 1955 841 3373 2010 5612.46 2204 > kk<-boxesLx(bmtr) Error in lv.1$Transitions[1:lv.len, " Persons:"] : subscript out of bounds Calls: boxesLx Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package shinyPredict

Current CRAN status: NOTE: 5, OK: 9

Version: 0.1.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Jari Haukka <jari.haukka@helsinki.fi>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Jari", family = "Haukka", role = c("aut", "cre"), email = "jari.haukka@helsinki.fi") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

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