CRAN Package Check Results for Maintainer ‘Joshua W. Lambert <j.w.l.lambert at rug.nl>’

Last updated on 2025-10-10 11:51:40 CEST.

Package	ERROR	OK
DAISIEprep	9	4

Package DAISIEprep

Current CRAN status: ERROR: 9, OK: 4

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [125s/169s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(DAISIEprep) > > test_check("DAISIEprep") [ FAIL 2 | WARN 1 | SKIP 14 | PASS 2237 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • Run only on CI (3): 'test-sensitivity.R:2:3', 'test-sensitivity.R:40:3', 'test-sensitivity.R:78:3' • empty test (11): 'test-create_daisie_data.R:169:1', 'test-create_daisie_data.R:173:1', 'test-create_daisie_data.R:177:1', 'test-create_daisie_data.R:181:1', 'test-create_daisie_data.R:185:1', 'test-create_daisie_data.R:189:1', 'test-create_daisie_data.R:231:1', 'test-create_daisie_data.R:235:1', 'test-create_daisie_data.R:239:1', 'test-create_daisie_data.R:243:1', 'test-create_daisie_data.R:247:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ──── Error in `geom_bar(stat = "identity", alpha = alpha, color = outline.color, size = outline.size, show.legend = F)`: Problem while computing aesthetics. i Error occurred in the 1st layer. Caused by error: ! Aesthetics are not valid data columns. x The following aesthetics are invalid: * `y = y` * `fill = fill` i Did you mistype the name of a data column or forget to add `after_stat()`? ── Error ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ──── Error in `geom_bar(stat = "identity", alpha = alpha, color = outline.color, size = outline.size, show.legend = F)`: Problem while computing aesthetics. i Error occurred in the 1st layer. Caused by error: ! Aesthetics are not valid data columns. x The following aesthetics are invalid: * `y = y` * `fill = fill` i Did you mistype the name of a data column or forget to add `after_stat()`? [ FAIL 2 | WARN 1 | SKIP 14 | PASS 2237 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [77s/96s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(DAISIEprep) > > test_check("DAISIEprep") [ FAIL 2 | WARN 1 | SKIP 14 | PASS 2237 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • Run only on CI (3): 'test-sensitivity.R:2:3', 'test-sensitivity.R:40:3', 'test-sensitivity.R:78:3' • empty test (11): 'test-create_daisie_data.R:169:1', 'test-create_daisie_data.R:173:1', 'test-create_daisie_data.R:177:1', 'test-create_daisie_data.R:181:1', 'test-create_daisie_data.R:185:1', 'test-create_daisie_data.R:189:1', 'test-create_daisie_data.R:231:1', 'test-create_daisie_data.R:235:1', 'test-create_daisie_data.R:239:1', 'test-create_daisie_data.R:243:1', 'test-create_daisie_data.R:247:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ──── Error in `geom_bar(stat = "identity", alpha = alpha, color = outline.color, size = outline.size, show.legend = F)`: Problem while computing aesthetics. i Error occurred in the 1st layer. Caused by error: ! Aesthetics are not valid data columns. x The following aesthetics are invalid: * `y = y` * `fill = fill` i Did you mistype the name of a data column or forget to add `after_stat()`? ── Error ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ──── Error in `geom_bar(stat = "identity", alpha = alpha, color = outline.color, size = outline.size, show.legend = F)`: Problem while computing aesthetics. i Error occurred in the 1st layer. Caused by error: ! Aesthetics are not valid data columns. x The following aesthetics are invalid: * `y = y` * `fill = fill` i Did you mistype the name of a data column or forget to add `after_stat()`? [ FAIL 2 | WARN 1 | SKIP 14 | PASS 2237 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [190s/259s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(DAISIEprep) > > test_check("DAISIEprep") [ FAIL 2 | WARN 1 | SKIP 14 | PASS 2237 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • Run only on CI (3): 'test-sensitivity.R:2:3', 'test-sensitivity.R:40:3', 'test-sensitivity.R:78:3' • empty test (11): 'test-create_daisie_data.R:169:1', 'test-create_daisie_data.R:173:1', 'test-create_daisie_data.R:177:1', 'test-create_daisie_data.R:181:1', 'test-create_daisie_data.R:185:1', 'test-create_daisie_data.R:189:1', 'test-create_daisie_data.R:231:1', 'test-create_daisie_data.R:235:1', 'test-create_daisie_data.R:239:1', 'test-create_daisie_data.R:243:1', 'test-create_daisie_data.R:247:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ──── Error in `geom_bar(stat = "identity", alpha = alpha, color = outline.color, size = outline.size, show.legend = F)`: Problem while computing aesthetics. i Error occurred in the 1st layer. Caused by error: ! Aesthetics are not valid data columns. x The following aesthetics are invalid: * `y = y` * `fill = fill` i Did you mistype the name of a data column or forget to add `after_stat()`? ── Error ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ──── Error in `geom_bar(stat = "identity", alpha = alpha, color = outline.color, size = outline.size, show.legend = F)`: Problem while computing aesthetics. i Error occurred in the 1st layer. Caused by error: ! Aesthetics are not valid data columns. x The following aesthetics are invalid: * `y = y` * `fill = fill` i Did you mistype the name of a data column or forget to add `after_stat()`? [ FAIL 2 | WARN 1 | SKIP 14 | PASS 2237 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [195s/587s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(DAISIEprep) > > test_check("DAISIEprep") [ FAIL 2 | WARN 1 | SKIP 14 | PASS 2237 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • Run only on CI (3): 'test-sensitivity.R:2:3', 'test-sensitivity.R:40:3', 'test-sensitivity.R:78:3' • empty test (11): 'test-create_daisie_data.R:169:1', 'test-create_daisie_data.R:173:1', 'test-create_daisie_data.R:177:1', 'test-create_daisie_data.R:181:1', 'test-create_daisie_data.R:185:1', 'test-create_daisie_data.R:189:1', 'test-create_daisie_data.R:231:1', 'test-create_daisie_data.R:235:1', 'test-create_daisie_data.R:239:1', 'test-create_daisie_data.R:243:1', 'test-create_daisie_data.R:247:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ──── Error in `geom_bar(stat = "identity", alpha = alpha, color = outline.color, size = outline.size, show.legend = F)`: Problem while computing aesthetics. i Error occurred in the 1st layer. Caused by error: ! Aesthetics are not valid data columns. x The following aesthetics are invalid: * `y = y` * `fill = fill` i Did you mistype the name of a data column or forget to add `after_stat()`? ── Error ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ──── Error in `geom_bar(stat = "identity", alpha = alpha, color = outline.color, size = outline.size, show.legend = F)`: Problem while computing aesthetics. i Error occurred in the 1st layer. Caused by error: ! Aesthetics are not valid data columns. x The following aesthetics are invalid: * `y = y` * `fill = fill` i Did you mistype the name of a data column or forget to add `after_stat()`? [ FAIL 2 | WARN 1 | SKIP 14 | PASS 2237 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.0
Check: tests
Result: ERROR Running 'testthat.R' [104s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(DAISIEprep) > > test_check("DAISIEprep") [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • Run only on CI (3): 'test-sensitivity.R:2:3', 'test-sensitivity.R:40:3', 'test-sensitivity.R:78:3' • empty test (11): 'test-create_daisie_data.R:169:1', 'test-create_daisie_data.R:173:1', 'test-create_daisie_data.R:177:1', 'test-create_daisie_data.R:181:1', 'test-create_daisie_data.R:185:1', 'test-create_daisie_data.R:189:1', 'test-create_daisie_data.R:231:1', 'test-create_daisie_data.R:235:1', 'test-create_daisie_data.R:239:1', 'test-create_daisie_data.R:243:1', 'test-create_daisie_data.R:247:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plot_phylod.R:3:3'): plot_phylod runs silent without error ─── `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings. ── Failure ('test-plot_phylod.R:8:3'): plot_phylod runs silent without error ─── `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings. ── Failure ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ── `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. ── Failure ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ── `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [117s/162s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(DAISIEprep) > > test_check("DAISIEprep") [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • Run only on CI (3): 'test-sensitivity.R:2:3', 'test-sensitivity.R:40:3', 'test-sensitivity.R:78:3' • empty test (11): 'test-create_daisie_data.R:169:1', 'test-create_daisie_data.R:173:1', 'test-create_daisie_data.R:177:1', 'test-create_daisie_data.R:181:1', 'test-create_daisie_data.R:185:1', 'test-create_daisie_data.R:189:1', 'test-create_daisie_data.R:231:1', 'test-create_daisie_data.R:235:1', 'test-create_daisie_data.R:239:1', 'test-create_daisie_data.R:243:1', 'test-create_daisie_data.R:247:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plot_phylod.R:3:3'): plot_phylod runs silent without error ─── `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings. ── Failure ('test-plot_phylod.R:8:3'): plot_phylod runs silent without error ─── `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings. ── Failure ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ── `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. ── Failure ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ── `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [118s/162s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(DAISIEprep) > > test_check("DAISIEprep") [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • Run only on CI (3): 'test-sensitivity.R:2:3', 'test-sensitivity.R:40:3', 'test-sensitivity.R:78:3' • empty test (11): 'test-create_daisie_data.R:169:1', 'test-create_daisie_data.R:173:1', 'test-create_daisie_data.R:177:1', 'test-create_daisie_data.R:181:1', 'test-create_daisie_data.R:185:1', 'test-create_daisie_data.R:189:1', 'test-create_daisie_data.R:231:1', 'test-create_daisie_data.R:235:1', 'test-create_daisie_data.R:239:1', 'test-create_daisie_data.R:243:1', 'test-create_daisie_data.R:247:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plot_phylod.R:3:3'): plot_phylod runs silent without error ─── `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings. ── Failure ('test-plot_phylod.R:8:3'): plot_phylod runs silent without error ─── `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings. ── Failure ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ── `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. ── Failure ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ── `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Version: 1.0.0
Check: tests
Result: ERROR Running 'testthat.R' [103s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(DAISIEprep) > > test_check("DAISIEprep") [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • Run only on CI (3): 'test-sensitivity.R:2:3', 'test-sensitivity.R:40:3', 'test-sensitivity.R:78:3' • empty test (11): 'test-create_daisie_data.R:169:1', 'test-create_daisie_data.R:173:1', 'test-create_daisie_data.R:177:1', 'test-create_daisie_data.R:181:1', 'test-create_daisie_data.R:185:1', 'test-create_daisie_data.R:189:1', 'test-create_daisie_data.R:231:1', 'test-create_daisie_data.R:235:1', 'test-create_daisie_data.R:239:1', 'test-create_daisie_data.R:243:1', 'test-create_daisie_data.R:247:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plot_phylod.R:3:3'): plot_phylod runs silent without error ─── `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings. ── Failure ('test-plot_phylod.R:8:3'): plot_phylod runs silent without error ─── `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings. ── Failure ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ── `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. ── Failure ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ── `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] Error: Test failures Execution halted Flavor: r-release-windows-x86_64

Version: 1.0.0
Check: tests
Result: ERROR Running 'testthat.R' [151s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(DAISIEprep) > > test_check("DAISIEprep") [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • Run only on CI (3): 'test-sensitivity.R:2:3', 'test-sensitivity.R:40:3', 'test-sensitivity.R:78:3' • empty test (11): 'test-create_daisie_data.R:169:1', 'test-create_daisie_data.R:173:1', 'test-create_daisie_data.R:177:1', 'test-create_daisie_data.R:181:1', 'test-create_daisie_data.R:185:1', 'test-create_daisie_data.R:189:1', 'test-create_daisie_data.R:231:1', 'test-create_daisie_data.R:235:1', 'test-create_daisie_data.R:239:1', 'test-create_daisie_data.R:243:1', 'test-create_daisie_data.R:247:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plot_phylod.R:3:3'): plot_phylod runs silent without error ─── `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings. ── Failure ('test-plot_phylod.R:8:3'): plot_phylod runs silent without error ─── `plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings. ── Failure ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ── `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. ── Failure ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ── `plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings. [ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64