CRAN Package Check Results for Maintainer ‘Hervé Perdry <herve.perdry at universite-paris-saclay.fr>’

Last updated on 2026-03-11 01:54:02 CET.

Package ERROR NOTE OK
gaston 3 11
houba 3 11
milorGWAS 2 12
salad 11 3

Package gaston

Current CRAN status: NOTE: 3, OK: 11

Version: 1.6
Check: installed package size
Result: NOTE installed size is 96.4Mb sub-directories of 1Mb or more: extdata 1.6Mb libs 92.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package houba

Current CRAN status: ERROR: 3, OK: 11

Version: 0.1.1
Check: installed package size
Result: NOTE installed size is 5.8Mb sub-directories of 1Mb or more: libs 5.2Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.1.1
Check: tests
Result: ERROR Running ‘apply.r’ [0s/0s] Running ‘arithmetic.r’ [0s/0s] Running ‘as-array.r’ [0s/0s] Running ‘colSums.r’ [0s/0s] Running ‘copy.r’ [0s/0s] Running ‘create.r’ [0s/0s] Running the tests in ‘tests/create.r’ failed. Complete output: > # Various tests about object creation and manipulation > require(houba) Loading required package: houba > > # float mmatrix ------------------------ > A <- mmatrix("float", 10, 20) > a <- as.matrix(A) > stopifnot(typeof(a) == "double") > > # set max size > houba(max.size = 10) $max.size [1] 10 > stopifnot( typeof(A[1:10]) == "double" ) > stopifnot( typeof(A[1:11]) == "S4" ) > > # assignement and subsetting > A[1,1] <- 12 > A[3,] <- 1.34 > stopifnot( all(abs(as.matrix(A[1:3, 1:2] - c(12, 0, 1.34, 0, 0, 1.34))) < 1e-6) ) > > A[5] <- pi > stopifnot( all(abs(as.vector(A[,1] - c(12, 0, 1.34, 0, pi, 0, 0, 0, 0, 0))) < 1e-6) ) > > # int mmatrix --------------------------- > B <- mmatrix("int", 10, 20) > b <- as.matrix(B) > stopifnot(typeof(b) == "integer") > > # assignement and subsetting > B[1,1] <- 12 > B[3,] <- 1.34 > stopifnot( all(as.matrix(B[1:3, 1:2]) == c(12L, 0L, 1L, 0L, 0L, 1L)) ) > > B[5] <- 2 > stopifnot( all(as.vector(B[5, 1:3]) == c(2L, 0L, 0L)) ) > > # assignement with other mmatrix values > houba(max.size = 0) # force non conversion to R $max.size [1] 0 > B[2,] <- A[3,] > stopifnot( all(as.vector(B[2, 1:4]) == c(1L, 1L, 1L, 1L)) ) > > B[5] <- A[3] > stopifnot( all(as.vector(B[5, 1:3]) == c(1L, 0L, 0L)) ) > > # double mvector ------------------------- > V <- mvector("double", 10) > v <- as.vector(V) > V[1:4] <- pi > stopifnot( all(as.vector(V[3:6]) == c(pi, pi, 0, 0)) ) > > # int array -------------------------- > C <- marray("int", 2:4) > C[,,1] <- 7 > C[,2,] <- B[5] Error in `[<-`(`*tmp*`, , 2, , value = new("mvector", ptr = <pointer: 0x117e14f40>, : argument is missing, with no default Calls: [<- -> [<- -> myMissing Execution halted Flavor: r-oldrel-macos-arm64

Version: 0.1.1
Check: tests
Result: ERROR Running ‘apply.r’ [0s/0s] Running ‘arithmetic.r’ [1s/1s] Running ‘as-array.r’ [0s/0s] Running ‘colSums.r’ [0s/0s] Running ‘copy.r’ [0s/0s] Running ‘create.r’ [0s/0s] Running the tests in ‘tests/create.r’ failed. Complete output: > # Various tests about object creation and manipulation > require(houba) Loading required package: houba > > # float mmatrix ------------------------ > A <- mmatrix("float", 10, 20) > a <- as.matrix(A) > stopifnot(typeof(a) == "double") > > # set max size > houba(max.size = 10) $max.size [1] 10 > stopifnot( typeof(A[1:10]) == "double" ) > stopifnot( typeof(A[1:11]) == "S4" ) > > # assignement and subsetting > A[1,1] <- 12 > A[3,] <- 1.34 > stopifnot( all(abs(as.matrix(A[1:3, 1:2] - c(12, 0, 1.34, 0, 0, 1.34))) < 1e-6) ) > > A[5] <- pi > stopifnot( all(abs(as.vector(A[,1] - c(12, 0, 1.34, 0, pi, 0, 0, 0, 0, 0))) < 1e-6) ) > > # int mmatrix --------------------------- > B <- mmatrix("int", 10, 20) > b <- as.matrix(B) > stopifnot(typeof(b) == "integer") > > # assignement and subsetting > B[1,1] <- 12 > B[3,] <- 1.34 > stopifnot( all(as.matrix(B[1:3, 1:2]) == c(12L, 0L, 1L, 0L, 0L, 1L)) ) > > B[5] <- 2 > stopifnot( all(as.vector(B[5, 1:3]) == c(2L, 0L, 0L)) ) > > # assignement with other mmatrix values > houba(max.size = 0) # force non conversion to R $max.size [1] 0 > B[2,] <- A[3,] > stopifnot( all(as.vector(B[2, 1:4]) == c(1L, 1L, 1L, 1L)) ) > > B[5] <- A[3] > stopifnot( all(as.vector(B[5, 1:3]) == c(1L, 0L, 0L)) ) > > # double mvector ------------------------- > V <- mvector("double", 10) > v <- as.vector(V) > V[1:4] <- pi > stopifnot( all(as.vector(V[3:6]) == c(pi, pi, 0, 0)) ) > > # int array -------------------------- > C <- marray("int", 2:4) > C[,,1] <- 7 > C[,2,] <- B[5] Error in `[<-`(`*tmp*`, , 2, , value = new("mvector", ptr = <pointer: 0x7fe1b4037ba0>, : argument is missing, with no default Calls: [<- -> [<- -> myMissing Execution halted Flavor: r-oldrel-macos-x86_64

Version: 0.1.1
Check: tests
Result: ERROR Running 'apply.r' [1s] Running 'arithmetic.r' [2s] Running 'as-array.r' [1s] Running 'colSums.r' [1s] Running 'copy.r' [1s] Running 'create.r' [1s] Running 'dim.r' [1s] Running 'extract-replace.r' [1s] Running 'inplace.r' [1s] Running 'marray.r' [1s] Running 'restore.r' [1s] Running the tests in 'tests/create.r' failed. Complete output: > # Various tests about object creation and manipulation > require(houba) Loading required package: houba > > # float mmatrix ------------------------ > A <- mmatrix("float", 10, 20) > a <- as.matrix(A) > stopifnot(typeof(a) == "double") > > # set max size > houba(max.size = 10) $max.size [1] 10 > stopifnot( typeof(A[1:10]) == "double" ) > stopifnot( typeof(A[1:11]) == "S4" ) > > # assignement and subsetting > A[1,1] <- 12 > A[3,] <- 1.34 > stopifnot( all(abs(as.matrix(A[1:3, 1:2] - c(12, 0, 1.34, 0, 0, 1.34))) < 1e-6) ) > > A[5] <- pi > stopifnot( all(abs(as.vector(A[,1] - c(12, 0, 1.34, 0, pi, 0, 0, 0, 0, 0))) < 1e-6) ) > > # int mmatrix --------------------------- > B <- mmatrix("int", 10, 20) > b <- as.matrix(B) > stopifnot(typeof(b) == "integer") > > # assignement and subsetting > B[1,1] <- 12 > B[3,] <- 1.34 > stopifnot( all(as.matrix(B[1:3, 1:2]) == c(12L, 0L, 1L, 0L, 0L, 1L)) ) > > B[5] <- 2 > stopifnot( all(as.vector(B[5, 1:3]) == c(2L, 0L, 0L)) ) > > # assignement with other mmatrix values > houba(max.size = 0) # force non conversion to R $max.size [1] 0 > B[2,] <- A[3,] > stopifnot( all(as.vector(B[2, 1:4]) == c(1L, 1L, 1L, 1L)) ) > > B[5] <- A[3] > stopifnot( all(as.vector(B[5, 1:3]) == c(1L, 0L, 0L)) ) > > # double mvector ------------------------- > V <- mvector("double", 10) > v <- as.vector(V) > V[1:4] <- pi > stopifnot( all(as.vector(V[3:6]) == c(pi, pi, 0, 0)) ) > > # int array -------------------------- > C <- marray("int", 2:4) > C[,,1] <- 7 > C[,2,] <- B[5] Error in `[<-`(`*tmp*`, , 2, , value = new("mvector", ptr = <pointer: 0x000001cb890f8ca0>, : argument is missing, with no default Calls: [<- -> [<- -> myMissing Execution halted Running the tests in 'tests/marray.r' failed. Complete output: > require(houba) Loading required package: houba > > a <- mvector("int", 2) > a[2] <- 1 > stopifnot( a[2] == 1 ) > > a <- mmatrix("float", 6, 3) > a[] <- 1:18 > stopifnot( all(a[1,] == c(1, 7, 13)) ) > > a <- marray("double", 2:4) > a[] <- 1:24 > stopifnot( all(a[2,1,] == c(2, 8, 14, 20)) ) Error in a[2, 1, ] : argument is missing, with no default Calls: stopifnot -> [ -> [ -> myMissing Execution halted Flavor: r-oldrel-windows-x86_64

Package milorGWAS

Current CRAN status: NOTE: 2, OK: 12

Version: 0.7.1
Check: installed package size
Result: NOTE installed size is 15.0Mb sub-directories of 1Mb or more: libs 14.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package salad

Current CRAN status: NOTE: 11, OK: 3

Version: 1.2
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘class-2-differential.r’ ‘dual-apply.r’ ‘dual-math.r’ ‘dual-summary.r’ ‘dual-test-near-equality.r’ ‘dual.r’ ‘dualFun1.Rd’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

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