CRAN Package Check Results for Maintainer ‘Henrik Bengtsson <henrikb at braju.com>’

Last updated on 2025-08-09 05:49:05 CEST.

Package	NOTE	OK
ACNE	6	7
aroma.affymetrix	9	4
aroma.apd		13
aroma.cn		13
aroma.core	9	4
calmate	2	11
dChipIO		13
doFuture		13
future		13
future.apply		13
future.batchtools		13
future.callr		13
future.mirai		13
future.tests		13
futureverse		13
globals		13
listenv		13
matrixStats		13
parallelly		13
port4me		13
profmem		13
progressr		13
PSCBS		13
R.cache		13
R.devices	1	12
R.filesets		13
R.huge		13
R.matlab	13
R.methodsS3	2	11
R.oo		13
R.rsp		13
R.utils		13
seguid		13
startup		13
TopDom	13

Package ACNE

Current CRAN status: NOTE: 6, OK: 7

Version: 0.9.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: doACNE.Rd: AffymetrixCelSet, Verbose Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package aroma.affymetrix

Current CRAN status: NOTE: 9, OK: 4

Version: 3.2.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: SmoothMultiarrayModel.Rd: ChromosomalModel, CopyNumberSegmentationModel byPath.AffymetrixFileSet.Rd: GenericDataFile calculateBaseline.ChipEffectSet.Rd: getAverageFile doCRMAv1.Rd: Verbose doCRMAv2.Rd: Verbose doFIRMA.Rd: Verbose doGCRMA.Rd: Verbose doRMA.Rd: Verbose justRMA.Rd: Verbose Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Version: 3.2.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘AffymetrixDataTestFiles’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 3.2.2
Check: installed package size
Result: NOTE installed size is 6.1Mb sub-directories of 1Mb or more: R 3.0Mb help 1.1Mb testScripts 1.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package aroma.apd

Current CRAN status: OK: 13

Package aroma.cn

Current CRAN status: OK: 13

Package aroma.core

Current CRAN status: NOTE: 9, OK: 4

Version: 3.3.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: writeDataFrame.AromaUnitSignalBinaryFile.Rd: TabularTextFile writeDataFrame.AromaUnitSignalBinarySet.Rd: TabularTextFileSet writeDataFrame.AromaUnitTabularBinaryFile.Rd: TabularTextFile Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Version: 3.3.1
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package calmate

Current CRAN status: NOTE: 2, OK: 11

Version: 0.13.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package dChipIO

Current CRAN status: OK: 13

Package doFuture

Current CRAN status: OK: 13

Package future

Current CRAN status: OK: 13

Package future.apply

Current CRAN status: OK: 13

Package future.batchtools

Current CRAN status: OK: 13

Package future.callr

Current CRAN status: OK: 13

Package future.mirai

Current CRAN status: OK: 13

Package future.tests

Current CRAN status: OK: 13

Package futureverse

Current CRAN status: OK: 13

Package globals

Current CRAN status: OK: 13

Package listenv

Current CRAN status: OK: 13

Package matrixStats

Current CRAN status: OK: 13

Package parallelly

Current CRAN status: OK: 13

Package port4me

Current CRAN status: OK: 13

Package profmem

Current CRAN status: OK: 13

Package progressr

Current CRAN status: OK: 13

Package PSCBS

Current CRAN status: OK: 13

Package R.cache

Current CRAN status: OK: 13

Package R.devices

Current CRAN status: NOTE: 1, OK: 12

Version: 2.17.2
Check: package vignettes
Result: NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? Flavor: r-oldrel-macos-x86_64

Package R.filesets

Current CRAN status: OK: 13

Package R.huge

Current CRAN status: OK: 13

Package R.matlab

Current CRAN status: NOTE: 13

Version: 3.7.0
Check: Rd files
Result: NOTE checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package R.methodsS3

Current CRAN status: NOTE: 2, OK: 11

Version: 1.8.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package R.oo

Current CRAN status: OK: 13

Package R.rsp

Current CRAN status: OK: 13

Package R.utils

Current CRAN status: OK: 13

Package seguid

Current CRAN status: OK: 13

Package startup

Current CRAN status: OK: 13

Package TopDom

Current CRAN status: NOTE: 13

Version: 0.10.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.10.1
Check: Rd files
Result: NOTE checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup? 21 | Recommended range is in {5, ..., 20}.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64