Last updated on 2025-05-15 11:50:34 CEST.
| Package | FAIL | NOTE |
|---|---|---|
| PhenotypeSimulator | 1 | 12 |
| plinkQC | 13 |
Current CRAN status: FAIL: 1, NOTE: 12
Version: 0.3.4
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Hannah Meyer <hannah.v.meyer@gmail.com>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.4
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.3.4
Check: re-building of vignette outputs
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> ##D writeStandardOutput(directory=tempdir(),
> ##D genotypes=genotypes$genotypes, phenotypes=phenotypes,
> ##D id_samples = genotypes$id_samples, id_snps = genotypes$id_snps,
> ##D id_phenos = colnames(phenotypes), format="plink")
> ##D
> ##D # Save in gemma and snptest format
> ##D writeStandardOutput(directory=tempdir(),
> ##D genotypes=genotypes$genotypes, phenotypes=phenotypes,
> ##D id_samples = genotypes$id_samples, id_snps = genotypes$id_snps,
> ##D id_phenos = colnames(phenotypes), kinship=kinship,
> ##D format=c("snptest", "gemma"))
> ## End(Not run)
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 13.58 0.53 14.14 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64
Version: 0.3.4
Check: installed package size
Result: NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 1.5Mb
extdata 3.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 13
Version: 0.3.4
Check: Rd files
Result: NOTE
checkRd: (-1) check_hwe.Rd:103: Lost braces; missing escapes or markup?
103 | {'ALL', 'AFF', 'UNAFF', 'ALL(QT)', 'ALL(NP)'}), A1 (Allele 1; usually minor),
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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