Last updated on 2026-02-15 09:50:58 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| climateStability | 2 | 12 | |
| occCite | 6 | 8 | |
| spocc | 14 | ||
| voluModel | 14 |
Current CRAN status: NOTE: 2, OK: 12
Version: 0.1.4
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Hannah Owens <hannah.owens@gmail.com>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 6, OK: 8
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(occCite)
>
> test_check("occCite")
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif, bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2334 17
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2189 13
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 145 4
[1] "Checking ggplot version...4.0.2"
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Saving _problems/test-taxonRectification-49.R
Saving _problems/test-taxonRectification-50.R
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• !requireNamespace("taxize", quietly = TRUE) is TRUE (1):
'test-taxonRectification.R:13:3'
• !requireNamespace("waffle") is TRUE (2): 'test-sumFig.R:43:3',
'test-sumFig.R:52:3'
• GBIF login available (1): 'test-GBIFLoginManager.R:16:3'
• On CRAN (14): 'test-GBIFLoginManager.R:24:3', 'test-GBIFtableCleanup.R:6:3',
'test-gbifRetriever.R:6:3', 'test-gbifRetriever.R:29:3',
'test-getBIENpoints.R:6:3', 'test-getBIENpoints.R:28:3',
'test-getGBIFpoints.R:6:3', 'test-getGBIFpoints.R:24:3',
'test-occCitation.R:26:3', 'test-prevGBIFdownload.R:6:3',
'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:9:3', 'test-tabGBIF.R:24:3',
'test-tabGBIF.R:48:3'
• internet connection established (1): 'test-occCitation.R:115:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-taxonRectification.R:49:3'): taxonRectification performs as expected ──
Expected `testResult$`Best Match`[1] == "Buteo buteo"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-taxonRectification.R:50:3'): taxonRectification performs as expected ──
Expected `testResult$`Searched Taxonomic Databases w/ Matches` == "NCBI"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(occCite)
>
> test_check("occCite")
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif, bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2334 17
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2189 13
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 145 4
[1] "Checking ggplot version...4.0.2"
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Saving _problems/test-taxonRectification-49.R
Saving _problems/test-taxonRectification-50.R
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• !requireNamespace("taxize", quietly = TRUE) is TRUE (1):
'test-taxonRectification.R:13:3'
• !requireNamespace("waffle") is TRUE (2): 'test-sumFig.R:43:3',
'test-sumFig.R:52:3'
• GBIF login available (1): 'test-GBIFLoginManager.R:16:3'
• On CRAN (14): 'test-GBIFLoginManager.R:24:3', 'test-GBIFtableCleanup.R:6:3',
'test-gbifRetriever.R:6:3', 'test-gbifRetriever.R:29:3',
'test-getBIENpoints.R:6:3', 'test-getBIENpoints.R:28:3',
'test-getGBIFpoints.R:6:3', 'test-getGBIFpoints.R:24:3',
'test-occCitation.R:26:3', 'test-prevGBIFdownload.R:6:3',
'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:9:3', 'test-tabGBIF.R:24:3',
'test-tabGBIF.R:48:3'
• internet connection established (1): 'test-occCitation.R:115:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-taxonRectification.R:49:3'): taxonRectification performs as expected ──
Expected `testResult$`Best Match`[1] == "Buteo buteo"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-taxonRectification.R:50:3'): taxonRectification performs as expected ──
Expected `testResult$`Searched Taxonomic Databases w/ Matches` == "NCBI"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(occCite)
>
> test_check("occCite")
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif, bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2334 17
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2189 13
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 145 4
[1] "Checking ggplot version...4.0.2"
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Saving _problems/test-taxonRectification-49.R
Saving _problems/test-taxonRectification-50.R
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• !requireNamespace("taxize", quietly = TRUE) is TRUE (1):
'test-taxonRectification.R:13:3'
• !requireNamespace("waffle") is TRUE (2): 'test-sumFig.R:43:3',
'test-sumFig.R:52:3'
• GBIF login available (1): 'test-GBIFLoginManager.R:16:3'
• On CRAN (14): 'test-GBIFLoginManager.R:24:3', 'test-GBIFtableCleanup.R:6:3',
'test-gbifRetriever.R:6:3', 'test-gbifRetriever.R:29:3',
'test-getBIENpoints.R:6:3', 'test-getBIENpoints.R:28:3',
'test-getGBIFpoints.R:6:3', 'test-getGBIFpoints.R:24:3',
'test-occCitation.R:26:3', 'test-prevGBIFdownload.R:6:3',
'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:9:3', 'test-tabGBIF.R:24:3',
'test-tabGBIF.R:48:3'
• internet connection established (1): 'test-occCitation.R:115:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-taxonRectification.R:49:3'): taxonRectification performs as expected ──
Expected `testResult$`Best Match`[1] == "Buteo buteo"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-taxonRectification.R:50:3'): taxonRectification performs as expected ──
Expected `testResult$`Searched Taxonomic Databases w/ Matches` == "NCBI"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.6.1
Check: package dependencies
Result: ERROR
Packages required but not available: 'BIEN', 'RPostgreSQL'
Package suggested but not available for checking: ‘waffle’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-macos-arm64
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(occCite)
>
> test_check("occCite")
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif, bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2334 17
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2189 13
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 145 4
[1] "Checking ggplot version...4.0.2"
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Saving _problems/test-taxonRectification-49.R
Saving _problems/test-taxonRectification-50.R
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• !requireNamespace("taxize", quietly = TRUE) is TRUE (1):
'test-taxonRectification.R:13:3'
• !requireNamespace("waffle") is TRUE (2): 'test-sumFig.R:43:3',
'test-sumFig.R:52:3'
• GBIF login available (1): 'test-GBIFLoginManager.R:16:3'
• On CRAN (14): 'test-GBIFLoginManager.R:24:3', 'test-GBIFtableCleanup.R:6:3',
'test-gbifRetriever.R:6:3', 'test-gbifRetriever.R:29:3',
'test-getBIENpoints.R:6:3', 'test-getBIENpoints.R:28:3',
'test-getGBIFpoints.R:6:3', 'test-getGBIFpoints.R:24:3',
'test-occCitation.R:26:3', 'test-prevGBIFdownload.R:6:3',
'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:9:3', 'test-tabGBIF.R:24:3',
'test-tabGBIF.R:48:3'
• internet connection established (1): 'test-occCitation.R:115:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-taxonRectification.R:49:3'): taxonRectification performs as expected ──
Expected `testResult$`Best Match`[1] == "Buteo buteo"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-taxonRectification.R:50:3'): taxonRectification performs as expected ──
Expected `testResult$`Searched Taxonomic Databases w/ Matches` == "NCBI"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(occCite)
>
> test_check("occCite")
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif, bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2334 17
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2189 13
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 145 4
[1] "Checking ggplot version...4.0.2"
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Saving _problems/test-taxonRectification-49.R
Saving _problems/test-taxonRectification-50.R
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• !requireNamespace("taxize", quietly = TRUE) is TRUE (1):
'test-taxonRectification.R:13:3'
• !requireNamespace("waffle") is TRUE (2): 'test-sumFig.R:43:3',
'test-sumFig.R:52:3'
• GBIF login available (1): 'test-GBIFLoginManager.R:16:3'
• On CRAN (14): 'test-GBIFLoginManager.R:24:3', 'test-GBIFtableCleanup.R:6:3',
'test-gbifRetriever.R:6:3', 'test-gbifRetriever.R:29:3',
'test-getBIENpoints.R:6:3', 'test-getBIENpoints.R:28:3',
'test-getGBIFpoints.R:6:3', 'test-getGBIFpoints.R:24:3',
'test-occCitation.R:26:3', 'test-prevGBIFdownload.R:6:3',
'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:9:3', 'test-tabGBIF.R:24:3',
'test-tabGBIF.R:48:3'
• internet connection established (1): 'test-occCitation.R:115:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-taxonRectification.R:49:3'): taxonRectification performs as expected ──
Expected `testResult$`Best Match`[1] == "Buteo buteo"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-taxonRectification.R:50:3'): taxonRectification performs as expected ──
Expected `testResult$`Searched Taxonomic Databases w/ Matches` == "NCBI"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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