CRAN Package Check Results for Maintainer ‘Florian Herla <fherla at sfu.ca>’

Last updated on 2025-12-13 03:50:09 CET.

Package	ERROR	OK
sarp.snowprofile.alignment	5	8
sarp.snowprofile.pyface		13

Package sarp.snowprofile.alignment

Current CRAN status: ERROR: 5, OK: 8

Version: 2.0.2
Check: examples
Result: ERROR Running examples in ‘sarp.snowprofile.alignment-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: dtwSP > ### Title: Calculate DTW alignment of two snow profiles > ### Aliases: dtwSP > > ### ** Examples > > > ## Align a modeled and a manual snow profile, primarily based on default settings: > dtwAlignment <- dtwSP(SPpairs$A_modeled, SPpairs$A_manual, open.end = FALSE) Error in r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0] : non-numeric argument to binary operator Calls: dtwSP ... format_snowprofileLayers -> snowprofileLayers -> diff -> diff.default Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.0.2
Check: tests
Result: ERROR Running ‘testthat.R’ [2s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(sarp.snowprofile.alignment) Loading required package: sarp.snowprofile > > test_check("sarp.snowprofile.alignment") Saving _problems/test-distanceSP-8.R Saving _problems/test-dtwSP-8.R Saving _problems/test-dtwSP-19.R Saving _problems/test-dtwSP-31.R Saving _problems/test-dtwSP-42.R Saving _problems/test-dtwSP-54.R Saving _problems/test-dtwSP-77.R Saving _problems/test-dtwSP-112.R Saving _problems/test-dtwSP-124.R [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-distanceSP.R:5:3'): simSP calculated as anticipated ──────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-distanceSP.R:5:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:5:3'): resampled, uneven (nL_q > nL_r), bottom.up (i.e., layer-tracking) ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:5:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:16:3'): resampled, uneven (nL_q > nL_r), top.down ────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:16:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:28:3'): resampled, uneven (nL_q < nL_r), bottom.up (i.e., layer-tracking) ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:28:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:39:3'): resampled, uneven (nL_q < nL_r), top.down ────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:39:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:51:3'): rescaled and resampled, top.down ─────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:51:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:74:3'): resampled, uneven, best match ────────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:74:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:109:3'): resampled, uneven, bottom.up ────────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:109:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:122:3'): resampled, uneven, top.down, unobservedBasalLayer, warp:jminTopDown ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:122:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.0.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘averaging.Rmd’ using rmarkdown Quitting from averaging.Rmd:45-52 [avgSPcalc] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `averageSP()`: ! Can't find an average profile! --- Backtrace: ▆ 1. └─sarp.snowprofile.alignment::averageSP(SPgroup2, n = 1, progressbar = FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'averaging.Rmd' failed with diagnostics: Can't find an average profile! --- failed re-building ‘averaging.Rmd’ --- re-building ‘clustering.Rmd’ using rmarkdown Quitting from clustering.Rmd:91-94 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `hclust()`: ! NA/NaN/Inf in foreign function call (arg 10) --- Backtrace: ▆ 1. └─sarp.snowprofile.alignment::clusterSP(...) 2. ├─base::do.call("hclust", c(list(d = distmat), config$args_cluster)) 3. └─stats::hclust(d = `<dist[,5]>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'clustering.Rmd' failed with diagnostics: NA/NaN/Inf in foreign function call (arg 10) --- failed re-building ‘clustering.Rmd’ --- re-building ‘technical-details.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘technical-details.Rmd’ --- re-building ‘workflow.Rmd’ using rmarkdown Quitting from workflow.Rmd:38-41 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: ! non-numeric argument to binary operator --- Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'workflow.Rmd' failed with diagnostics: non-numeric argument to binary operator --- failed re-building ‘workflow.Rmd’ SUMMARY: processing the following files failed: ‘averaging.Rmd’ ‘clustering.Rmd’ ‘workflow.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.0.2
Check: tests
Result: ERROR Running ‘testthat.R’ [1s/2s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(sarp.snowprofile.alignment) Loading required package: sarp.snowprofile > > test_check("sarp.snowprofile.alignment") Saving _problems/test-distanceSP-8.R Saving _problems/test-dtwSP-8.R Saving _problems/test-dtwSP-19.R Saving _problems/test-dtwSP-31.R Saving _problems/test-dtwSP-42.R Saving _problems/test-dtwSP-54.R Saving _problems/test-dtwSP-77.R Saving _problems/test-dtwSP-112.R Saving _problems/test-dtwSP-124.R [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-distanceSP.R:5:3'): simSP calculated as anticipated ──────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-distanceSP.R:5:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:5:3'): resampled, uneven (nL_q > nL_r), bottom.up (i.e., layer-tracking) ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:5:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:16:3'): resampled, uneven (nL_q > nL_r), top.down ────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:16:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:28:3'): resampled, uneven (nL_q < nL_r), bottom.up (i.e., layer-tracking) ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:28:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:39:3'): resampled, uneven (nL_q < nL_r), top.down ────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:39:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:51:3'): rescaled and resampled, top.down ─────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:51:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:74:3'): resampled, uneven, best match ────────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:74:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:109:3'): resampled, uneven, bottom.up ────────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:109:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:122:3'): resampled, uneven, top.down, unobservedBasalLayer, warp:jminTopDown ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:122:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.0.2
Check: examples
Result: ERROR Running examples in ‘sarp.snowprofile.alignment-Ex.R’ failed The error most likely occurred in: > ### Name: dtwSP > ### Title: Calculate DTW alignment of two snow profiles > ### Aliases: dtwSP > > ### ** Examples > > > ## Align a modeled and a manual snow profile, primarily based on default settings: > dtwAlignment <- dtwSP(SPpairs$A_modeled, SPpairs$A_manual, open.end = FALSE) Error in r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0] : non-numeric argument to binary operator Calls: dtwSP ... format_snowprofileLayers -> snowprofileLayers -> diff -> diff.default Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 2.0.2
Check: tests
Result: ERROR Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(sarp.snowprofile.alignment) Loading required package: sarp.snowprofile > > test_check("sarp.snowprofile.alignment") Saving _problems/test-distanceSP-8.R Saving _problems/test-dtwSP-8.R Saving _problems/test-dtwSP-19.R Saving _problems/test-dtwSP-31.R Saving _problems/test-dtwSP-42.R Saving _problems/test-dtwSP-54.R Saving _problems/test-dtwSP-77.R Saving _problems/test-dtwSP-112.R Saving _problems/test-dtwSP-124.R [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-distanceSP.R:5:3'): simSP calculated as anticipated ──────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-distanceSP.R:5:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:5:3'): resampled, uneven (nL_q > nL_r), bottom.up (i.e., layer-tracking) ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:5:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:16:3'): resampled, uneven (nL_q > nL_r), top.down ────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:16:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:28:3'): resampled, uneven (nL_q < nL_r), bottom.up (i.e., layer-tracking) ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:28:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:39:3'): resampled, uneven (nL_q < nL_r), top.down ────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:39:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:51:3'): rescaled and resampled, top.down ─────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:51:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:74:3'): resampled, uneven, best match ────────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:74:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:109:3'): resampled, uneven, bottom.up ────────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:109:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:122:3'): resampled, uneven, top.down, unobservedBasalLayer, warp:jminTopDown ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:122:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.0.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘averaging.Rmd’ using rmarkdown Quitting from averaging.Rmd:45-52 [avgSPcalc] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `averageSP()`: ! Can't find an average profile! --- Backtrace: ▆ 1. └─sarp.snowprofile.alignment::averageSP(SPgroup2, n = 1, progressbar = FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'averaging.Rmd' failed with diagnostics: Can't find an average profile! --- failed re-building ‘averaging.Rmd’ --- re-building ‘clustering.Rmd’ using rmarkdown Quitting from clustering.Rmd:91-94 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `hclust()`: ! NA/NaN/Inf in foreign function call (arg 10) --- Backtrace: ▆ 1. └─sarp.snowprofile.alignment::clusterSP(...) 2. ├─base::do.call("hclust", c(list(d = distmat), config$args_cluster)) 3. └─stats::hclust(d = `<dist[,5]>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'clustering.Rmd' failed with diagnostics: NA/NaN/Inf in foreign function call (arg 10) --- failed re-building ‘clustering.Rmd’ --- re-building ‘technical-details.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘technical-details.Rmd’ --- re-building ‘workflow.Rmd’ using rmarkdown Quitting from workflow.Rmd:38-41 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: ! non-numeric argument to binary operator --- Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'workflow.Rmd' failed with diagnostics: non-numeric argument to binary operator --- failed re-building ‘workflow.Rmd’ SUMMARY: processing the following files failed: ‘averaging.Rmd’ ‘clustering.Rmd’ ‘workflow.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.0.2
Check: tests
Result: ERROR Running 'testthat.R' [2s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(sarp.snowprofile.alignment) Loading required package: sarp.snowprofile > > test_check("sarp.snowprofile.alignment") Saving _problems/test-distanceSP-8.R Saving _problems/test-dtwSP-8.R Saving _problems/test-dtwSP-19.R Saving _problems/test-dtwSP-31.R Saving _problems/test-dtwSP-42.R Saving _problems/test-dtwSP-54.R Saving _problems/test-dtwSP-77.R Saving _problems/test-dtwSP-112.R Saving _problems/test-dtwSP-124.R [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-distanceSP.R:5:3'): simSP calculated as anticipated ──────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-distanceSP.R:5:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:5:3'): resampled, uneven (nL_q > nL_r), bottom.up (i.e., layer-tracking) ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:5:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:16:3'): resampled, uneven (nL_q > nL_r), top.down ────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:16:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:28:3'): resampled, uneven (nL_q < nL_r), bottom.up (i.e., layer-tracking) ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:28:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:39:3'): resampled, uneven (nL_q < nL_r), top.down ────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:39:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:51:3'): rescaled and resampled, top.down ─────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:51:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:74:3'): resampled, uneven, best match ────────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:74:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:109:3'): resampled, uneven, bottom.up ────────────────── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:109:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ── Error ('test-dtwSP.R:122:3'): resampled, uneven, top.down, unobservedBasalLayer, warp:jminTopDown ── Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:122:3 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) [ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 2.0.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'averaging.Rmd' using rmarkdown Quitting from averaging.Rmd:45-52 [avgSPcalc] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `averageSP()`: ! Can't find an average profile! --- Backtrace: ▆ 1. └─sarp.snowprofile.alignment::averageSP(SPgroup2, n = 1, progressbar = FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'averaging.Rmd' failed with diagnostics: Can't find an average profile! --- failed re-building 'averaging.Rmd' --- re-building 'clustering.Rmd' using rmarkdown Quitting from clustering.Rmd:91-94 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `hclust()`: ! NA/NaN/Inf in foreign function call (arg 10) --- Backtrace: ▆ 1. └─sarp.snowprofile.alignment::clusterSP(...) 2. ├─base::do.call("hclust", c(list(d = distmat), config$args_cluster)) 3. └─stats::hclust(d = `<dist[,5]>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'clustering.Rmd' failed with diagnostics: NA/NaN/Inf in foreign function call (arg 10) --- failed re-building 'clustering.Rmd' --- re-building 'technical-details.Rmd' using rmarkdown --- finished re-building 'technical-details.Rmd' --- re-building 'workflow.Rmd' using rmarkdown Quitting from workflow.Rmd:38-41 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: ! non-numeric argument to binary operator --- Backtrace: ▆ 1. └─sarp.snowprofile.alignment::dtwSP(...) 2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate) 3. └─sarp.snowprofile::snowprofileLayers(...) 4. └─sarp.snowprofile::format_snowprofileLayers(...) 5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE) 6. ├─base::diff(sapply(entries[!is.na(entries)], length)) 7. └─base::diff.default(sapply(entries[!is.na(entries)], length)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'workflow.Rmd' failed with diagnostics: non-numeric argument to binary operator --- failed re-building 'workflow.Rmd' SUMMARY: processing the following files failed: 'averaging.Rmd' 'clustering.Rmd' 'workflow.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64

Package sarp.snowprofile.pyface

Current CRAN status: OK: 13