CRAN Package Check Results for Maintainer ‘Emma Gail <emmahelengail at gmail.com>’

Last updated on 2025-12-28 03:52:03 CET.

Package	ERROR	NOTE	OK
rADA	2	5	6

Package rADA

Current CRAN status: ERROR: 2, NOTE: 5, OK: 6

Version: 1.1.9
Check: examples
Result: ERROR Running examples in ‘rADA-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: scpForestPlot > ### Title: Generate forest plot of SCP values > ### Aliases: scpForestPlot scpForestPlot,ImmunoAssay-method > > ### ** Examples > > assay.obj <- importAssay(assay.df = lognormAssay, exp.name = 'Experiment1') > assay.obj <- scp(assay.obj, category = 'Experiment1', distrib = 'normal', + data.transf = TRUE, transf.method = 'log10', rm.out = FALSE) > scpForestPlot(assay.obj) Error in xtfrm.data.frame(list(mean = 23.0524633087061, upper = 23.5679826580867, : cannot xtfrm data frames Calls: scpForestPlot ... prFpConvertMultidimArray -> xtfrm -> xtfrm.data.frame Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.1.9
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘rada_vignette.Rmd’ using knitr Quitting from rada_vignette.Rmd:392-396 [unnamed-chunk-23] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `xtfrm.data.frame()`: ! cannot xtfrm data frames --- Backtrace: ▆ 1. ├─rADA::scpForestPlot(assay.obj) 2. └─rADA::scpForestPlot(assay.obj) 3. ├─forestplot::forestplot(...) 4. └─forestplot:::forestplot.default(...) 5. └─forestplot:::createEstimateArray(labeltext, lower, upper, mean) 6. └─forestplot:::prFpConvertMultidimArray(mean) 7. ├─base::xtfrm(`<df[,3]>`) 8. └─base::xtfrm.data.frame(`<df[,3]>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'rada_vignette.Rmd' failed with diagnostics: cannot xtfrm data frames --- failed re-building ‘rada_vignette.Rmd’ --- re-building ‘rada_vignette_supplemental.Rmd’ using knitr Quitting from rada_vignette_supplemental.Rmd:392-396 [unnamed-chunk-23] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `xtfrm.data.frame()`: ! cannot xtfrm data frames --- Backtrace: ▆ 1. ├─rADA::scpForestPlot(assay.obj) 2. └─rADA::scpForestPlot(assay.obj) 3. ├─forestplot::forestplot(...) 4. └─forestplot:::forestplot.default(...) 5. └─forestplot:::createEstimateArray(labeltext, lower, upper, mean) 6. └─forestplot:::prFpConvertMultidimArray(mean) 7. ├─base::xtfrm(`<df[,3]>`) 8. └─base::xtfrm.data.frame(`<df[,3]>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'rada_vignette_supplemental.Rmd' failed with diagnostics: cannot xtfrm data frames --- failed re-building ‘rada_vignette_supplemental.Rmd’ SUMMARY: processing the following files failed: ‘rada_vignette.Rmd’ ‘rada_vignette_supplemental.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.1.9
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘Hmisc’ ‘car’ ‘dplyr’ ‘grid’ ‘gridExtra’ ‘knitr’ ‘lmerTest’ ‘tidyr’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.9
Check: installed package size
Result: NOTE installed size is 5.7Mb sub-directories of 1Mb or more: doc 5.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64