Last updated on 2025-12-04 09:50:20 CET.
| Package | ERROR | OK |
|---|---|---|
| doseminer | 9 | 4 |
| drugprepr | 13 | |
| index0 | 13 |
Current CRAN status: ERROR: 9, OK: 4
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘doseminer-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: extract_from_prescription
> ### Title: Extract dosage information from free-text English-language
> ### prescriptions
> ### Aliases: extract_from_prescription
>
> ### ** Examples
>
> extract_from_prescription(example_prescriptions)
Error in `str_replace_all()`:
! `replacement` function must return a vector the same length as the
input (8), not length 1.
Backtrace:
▆
1. ├─doseminer::extract_from_prescription(example_prescriptions)
2. │ └─... %>% ...
3. ├─stringr::str_replace_all(...)
4. │ └─stringr:::check_lengths(string, pattern, replacement)
5. │ └─vctrs::vec_size_common(...)
6. ├─stringr::str_replace_all(...)
7. │ └─stringr:::check_lengths(string, pattern, replacement)
8. │ └─vctrs::vec_size_common(...)
9. ├─stringr::str_replace_all(., "[0-9]+ / week", weekly_to_daily)
10. │ └─stringr:::str_transform_all(string, pattern, replacement)
11. │ └─stringr::str_locate_all(string, pattern)
12. │ └─stringr:::check_lengths(string, pattern)
13. │ └─vctrs::vec_size_common(...)
14. ├─stringr::str_replace_all(...)
15. │ └─stringr:::check_lengths(string, pattern, replacement)
16. │ └─vctrs::vec_size_common(...)
17. ├─stringr::str_replace_all(...)
18. │ └─stringr:::check_lengths(string, pattern, replacement)
19. │ └─vctrs::vec_size_common(...)
20. ├─stringr::str_replace_all(., "(?:every|per) week|weekly", "every 7 days")
21. │ └─stringr:::check_lengths(string, pattern, replacement)
22. │ └─vctrs::vec_size_common(...)
23. ├─stringr::str_replace_all(...)
24. │ └─stringr:::check_lengths(string, pattern, replacement)
25. │ └─vctrs::vec_size_common(...)
26. ├─stringr::str_replace_all(...)
27. │ └─stringr:::check_lengths(string, pattern, replacement)
28. │ └─vctrs::vec_size_common(...)
29. ├─stringr::str_replace_all(...)
30. │ └─stringr:::check_lengths(string, pattern, replacement)
31. │ └─vctrs::vec_size_common(...)
32. ├─stringr::str_replace_all(., "times(?:/| a| per) ?", "/ ")
33. │ └─stringr:::check_lengths(string, pattern, replacement)
34. │ └─vctrs::vec_size_common(...)
35. ├─stringr::str_replace_all(...)
36. │ └─stringi::stri_replace_all_regex(...)
37. └─stringr::str_replace_all(...)
38. └─stringr:::str_transform_all(string, pattern, replacement)
39. └─cli::cli_abort(...)
40. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘case_study.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘case_study.Rmd’
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:84-86 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
`replacement` function must return a vector the same length as the input
(8), not length 1.
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘doseminer-Ex.R’ failed
The error most likely occurred in:
> ### Name: extract_from_prescription
> ### Title: Extract dosage information from free-text English-language
> ### prescriptions
> ### Aliases: extract_from_prescription
>
> ### ** Examples
>
> extract_from_prescription(example_prescriptions)
Error in `str_replace_all()`:
! `replacement` function must return a vector the same length as the
input (8), not length 1.
Backtrace:
▆
1. ├─doseminer::extract_from_prescription(example_prescriptions)
2. │ └─... %>% ...
3. ├─stringr::str_replace_all(...)
4. │ └─stringr:::check_lengths(string, pattern, replacement)
5. │ └─vctrs::vec_size_common(...)
6. ├─stringr::str_replace_all(...)
7. │ └─stringr:::check_lengths(string, pattern, replacement)
8. │ └─vctrs::vec_size_common(...)
9. ├─stringr::str_replace_all(., "[0-9]+ / week", weekly_to_daily)
10. │ └─stringr:::str_transform_all(string, pattern, replacement)
11. │ └─stringr::str_locate_all(string, pattern)
12. │ └─stringr:::check_lengths(string, pattern)
13. │ └─vctrs::vec_size_common(...)
14. ├─stringr::str_replace_all(...)
15. │ └─stringr:::check_lengths(string, pattern, replacement)
16. │ └─vctrs::vec_size_common(...)
17. ├─stringr::str_replace_all(...)
18. │ └─stringr:::check_lengths(string, pattern, replacement)
19. │ └─vctrs::vec_size_common(...)
20. ├─stringr::str_replace_all(., "(?:every|per) week|weekly", "every 7 days")
21. │ └─stringr:::check_lengths(string, pattern, replacement)
22. │ └─vctrs::vec_size_common(...)
23. ├─stringr::str_replace_all(...)
24. │ └─stringr:::check_lengths(string, pattern, replacement)
25. │ └─vctrs::vec_size_common(...)
26. ├─stringr::str_replace_all(...)
27. │ └─stringr:::check_lengths(string, pattern, replacement)
28. │ └─vctrs::vec_size_common(...)
29. ├─stringr::str_replace_all(...)
30. │ └─stringr:::check_lengths(string, pattern, replacement)
31. │ └─vctrs::vec_size_common(...)
32. ├─stringr::str_replace_all(., "times(?:/| a| per) ?", "/ ")
33. │ └─stringr:::check_lengths(string, pattern, replacement)
34. │ └─vctrs::vec_size_common(...)
35. ├─stringr::str_replace_all(...)
36. │ └─stringi::stri_replace_all_regex(...)
37. └─stringr::str_replace_all(...)
38. └─stringr:::str_transform_all(string, pattern, replacement)
39. └─cli::cli_abort(...)
40. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘case_study.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘case_study.Rmd’
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:84-86 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
`replacement` function must return a vector the same length as the input
(8), not length 1.
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'case_study.Rmd' using rmarkdown
--- finished re-building 'case_study.Rmd'
--- re-building 'introduction.Rmd' using rmarkdown
Quitting from introduction.Rmd:84-86 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
`replacement` function must return a vector the same length as the input
(8), not length 1.
--- failed re-building 'introduction.Rmd'
SUMMARY: processing the following file failed:
'introduction.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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