CRAN Package Check Results for Maintainer ‘Cody L Marquart <cody.marquart at wisc.edu>’

Last updated on 2025-12-28 05:50:20 CET.

Package	ERROR	NOTE	OK
ncodeR			13
rENA	1	4	8
rhoR			13
tma		5	8

Package ncodeR

Current CRAN status: OK: 13

Package rENA

Current CRAN status: ERROR: 1, NOTE: 4, OK: 8

Version: 0.3.0
Check: compiled code
Result: NOTE File ‘rENA/libs/rENA.so’: Found non-API call to R: ‘ATTRIB’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.0
Check: compiled code
Result: NOTE File 'rENA/libs/x64/rENA.dll': Found non-API call to R: 'ATTRIB' Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual, and section 'Moving into C API compliance' for issues with the use of non-API entry points. Flavor: r-devel-windows-x86_64

Version: 0.3.0
Check: examples
Result: ERROR Running examples in 'rENA-Ex.R' failed The error most likely occurred in: > ### Name: ena > ### Title: Wrapper to generate, and optionally plot, an ENA model > ### Aliases: ena > > ### ** Examples > > data(RS.data) > > rs = ena( + data = RS.data, + units = c("UserName","Condition", "GroupName"), + conversation = c("Condition","GroupName"), + codes = c('Data', + 'Technical.Constraints', + 'Performance.Parameters', + 'Client.and.Consultant.Requests', + 'Design.Reasoning', + 'Collaboration'), + window.size.back = 4, + print.plots = FALSE, + groupVar = "Condition", + groups = c("FirstGame", "SecondGame") + ) Error in `[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, : attempt access index 12/12 in VECTOR_ELT Calls: ena ... <Anonymous> -> accumulate.data -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 0.3.0
Check: tests
Result: ERROR Running 'testthat.R' [11s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(rENA) Registered S3 method overwritten by 'rENA': method from as.matrix.ena.matrix tma For the latest features and updates, install from https://cran.qe-libs.org Attaching package: 'rENA' The following object is masked from 'package:stats': optimize The following object is masked from 'package:methods': show The following object is masked from 'package:base': units > > test_check("rENA") Saving _problems/test-ena_group-19.R Saving _problems/test-ena_wrapper-23.R Saving _problems/test-piping-17.R Saving _problems/test-set_creator-30.R Saving _problems/test-set_creator-121.R Saving _problems/test-table_subsetting-17.R Saving _problems/test-verify_toy_data_2-87.R Saving _problems/test-zero-networks-10.R Saving _problems/test.connection.matrix-19.R Saving _problems/test.ena.accumulate.data.file-75.R Saving _problems/test.ena.accumulate.data.file-133.R Saving _problems/test.ena.accumulate.data.file-161.R Saving _problems/test.ena.accumulations-262.R Saving _problems/test.ena.accumulations-365.R Saving _problems/test.ena.make.set.old-137.R [1] "Using custom rotation.set." [1] "Using custom rotation.set." Saving _problems/test.ena.use.cases-13.R Saving _problems/test.util.classes-19.R Saving _problems/test.util.matrices-17.R Saving _problems/test.utils-17.R Saving _problems/test.weighted.single.window-24.R [ FAIL 20 | WARN 0 | SKIP 3 | PASS 113 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • empty test (3): , 'test.weighted.single.window.R:34:1', 'test.weighted.single.window.R:51:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-ena_group.R:13:1'): (code run outside of `test_that()`) ──────── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena(...) at test-ena_group.R:13:1 2. └─rENA:::ena.set.creator(...) 3. └─rENA::ena.accumulate.data(...) 4. └─data$process() 5. └─private$loadFile() 6. └─rENA:::accumulate.data(self) 7. ├─...[] 8. └─data.table:::`[.data.table`(...) ── Error ('test-ena_wrapper.R:17:3'): Verify group with single unit ──────────── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena(...) at test-ena_wrapper.R:17:3 2. └─rENA:::ena.set.creator(...) 3. └─rENA::ena.accumulate.data(...) 4. └─data$process() 5. └─private$loadFile() 6. └─rENA:::accumulate.data(self) 7. ├─...[] 8. └─data.table:::`[.data.table`(...) ── Error ('test-piping.R:11:1'): (code run outside of `test_that()`) ─────────── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena.accumulate.data(...) at test-piping.R:11:1 2. └─data$process() 3. └─private$loadFile() 4. └─rENA:::accumulate.data(self) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) ── Error ('test-set_creator.R:22:3'): verify warnings ────────────────────────── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 12/12 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-set_creator.R:22:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─rENA:::ena.set.creator(...) 7. └─rENA::ena.accumulate.data(...) 8. └─data$process() 9. └─private$loadFile() 10. └─rENA:::accumulate.data(self) 11. ├─...[] 12. └─data.table:::`[.data.table`(...) ── Error ('test-set_creator.R:112:3'): verify messages ───────────────────────── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 12/12 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_message(...) at test-set_creator.R:112:3 2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─rENA:::ena.set.creator(...) 7. └─rENA::ena.accumulate.data(...) 8. └─data$process() 9. └─private$loadFile() 10. └─rENA:::accumulate.data(self) 11. ├─...[] 12. └─data.table:::`[.data.table`(...) ── Error ('test-table_subsetting.R:11:3'): Remove rows from meta data ────────── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena(...) at test-table_subsetting.R:11:3 2. └─rENA:::ena.set.creator(...) 3. └─rENA::ena.accumulate.data(...) 4. └─data$process() 5. └─private$loadFile() 6. └─rENA:::accumulate.data(self) 7. ├─...[] 8. └─data.table:::`[.data.table`(...) ── Error ('test-verify_toy_data_2.R:82:1'): (code run outside of `test_that()`) ── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT Backtrace: ▆ 1. └─rENA:::ena.accumulate.data.file(...) at test-verify_toy_data_2.R:82:1 2. └─data$process() 3. └─private$loadFile() 4. └─rENA:::accumulate.data(self) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) ── Error ('test-zero-networks.R:3:1'): (code run outside of `test_that()`) ───── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 15/15 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena.accumulate.data(...) at test-zero-networks.R:3:1 2. └─data$process() 3. └─private$loadFile() 4. └─rENA:::accumulate.data(self) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) ── Error ('test.connection.matrix.R:13:1'): (code run outside of `test_that()`) ── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena(...) at test.connection.matrix.R:13:1 2. └─rENA:::ena.set.creator(...) 3. └─rENA::ena.accumulate.data(...) 4. └─data$process() 5. └─private$loadFile() 6. └─rENA:::accumulate.data(self) 7. ├─...[] 8. └─data.table:::`[.data.table`(...) ── Error ('test.ena.accumulate.data.file.R:70:3'): Accumulate weighted data. ─── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT Backtrace: ▆ 1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:70:3 2. └─data$process() 3. └─private$loadFile() 4. └─rENA:::accumulate.data(self) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) ── Error ('test.ena.accumulate.data.file.R:127:3'): Corrected adjacency.vectors equals manually corrected raw data (correction = log) ── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT Backtrace: ▆ 1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:127:3 2. └─data$process() 3. └─private$loadFile() 4. └─rENA:::accumulate.data(self) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) ── Error ('test.ena.accumulate.data.file.R:161:3'): Simple forwarded metadata ── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:161:3 2. └─data$process() 3. └─private$loadFile() 4. └─rENA:::accumulate.data(self) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) ── Error ('test.ena.accumulations.R:260:3'): Test accumulation with infinite windows ── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena.accumulate.data(...) at test.ena.accumulations.R:260:3 2. └─data$process() 3. └─private$loadFile() 4. └─rENA:::accumulate.data(self) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) ── Error ('test.ena.accumulations.R:363:3'): Test forward windows ────────────── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena.accumulate.data(...) at test.ena.accumulations.R:363:3 2. └─data$process() 3. └─private$loadFile() 4. └─rENA:::accumulate.data(self) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) ── Error ('test.ena.make.set.old.R:131:3'): Old sets are the same as the new ones ── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 21/21 in VECTOR_ELT Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test.ena.make.set.old.R:131:3 2. │ └─base::withCallingHandlers(...) 3. └─rENA:::ena.accumulate.data.file(...) 4. └─data$process() 5. └─private$loadFile() 6. └─rENA:::accumulate.data(self) 7. ├─...[] 8. └─data.table:::`[.data.table`(...) ── Error ('test.ena.use.cases.R:7:1'): (code run outside of `test_that()`) ───── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 14/14 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena.accumulate.data(...) at test.ena.use.cases.R:7:1 2. └─data$process() 3. └─private$loadFile() 4. └─rENA:::accumulate.data(self) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) ── Error ('test.util.classes.R:13:1'): (code run outside of `test_that()`) ───── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena(...) at test.util.classes.R:13:1 2. └─rENA:::ena.set.creator(...) 3. └─rENA::ena.accumulate.data(...) 4. └─data$process() 5. └─private$loadFile() 6. └─rENA:::accumulate.data(self) 7. ├─...[] 8. └─data.table:::`[.data.table`(...) ── Error ('test.util.matrices.R:11:1'): (code run outside of `test_that()`) ──── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena(...) at test.util.matrices.R:11:1 2. └─rENA:::ena.set.creator(...) 3. └─rENA::ena.accumulate.data(...) 4. └─data$process() 5. └─private$loadFile() 6. └─rENA:::accumulate.data(self) 7. ├─...[] 8. └─data.table:::`[.data.table`(...) ── Error ('test.utils.R:11:1'): (code run outside of `test_that()`) ──────────── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena(...) at test.utils.R:11:1 2. └─rENA:::ena.set.creator(...) 3. └─rENA::ena.accumulate.data(...) 4. └─data$process() 5. └─private$loadFile() 6. └─rENA:::accumulate.data(self) 7. ├─...[] 8. └─data.table:::`[.data.table`(...) ── Error ('test.weighted.single.window.R:21:3'): Verify binary/weighted accumulations with window > 1 are not equal ── Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─rENA::ena.accumulate.data(...) at test.weighted.single.window.R:21:3 2. └─data$process() 3. └─private$loadFile() 4. └─rENA:::accumulate.data(self) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) [ FAIL 20 | WARN 0 | SKIP 3 | PASS 113 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Package rhoR

Current CRAN status: OK: 13

Package tma

Current CRAN status: NOTE: 5, OK: 8

Version: 0.3.1
Check: compiled code
Result: NOTE File ‘tma/libs/tma.so’: Found non-API call to R: ‘ATTRIB’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.1
Check: compiled code
Result: NOTE File 'tma/libs/x64/tma.dll': Found non-API call to R: 'ATTRIB' Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual, and section 'Moving into C API compliance' for issues with the use of non-API entry points. Flavor: r-devel-windows-x86_64