CRAN Package Check Results for Maintainer ‘Carl Boettiger <cboettig at gmail.com>’

Last updated on 2026-02-15 07:51:05 CET.

Package	ERROR	NOTE	OK
arkdb	1	1	12
codemeta			14
codemetar			14
contentid			14
duckdbfs			14
earthdatalogin			14
EcoNetGen		2	12
EML			14
emld			14
gbifdb		2	12
knitcitations			14
minioclient			14
neonstore		11	3
piggyback			14
pmc			14
rdflib			14
rfishbase			14
RNeXML		14
roxigraph		3	11
sarsop		3	11
taxadb		11	3
taxalight		2	12
treebase			14
virtuoso			14

Package arkdb

Current CRAN status: ERROR: 1, NOTE: 1, OK: 12

Version: 0.0.19
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [33s/31s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(arkdb) > > test_check("arkdb") [1] "Testing using backend duckdb_connection" Saving _problems/test-arkdb-224.R [ FAIL 1 | WARN 7 | SKIP 8 | PASS 46 ] ══ Skipped tests (8) ═══════════════════════════════════════════════════════════ • On CRAN (6): 'test-arkdb.R:287:3', 'test-bulk-import.R:6:3', 'test-bulk-import.R:72:3', 'test-errors.R:12:3', 'test-errors.R:34:3', 'test-errors.R:53:3' • {MonetDBLite} is not installed (2): 'test-arkdb.R:132:3', 'test-local_db.R:24:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-arkdb.R:221:3'): try with parquet & alternate method ─────────── Error in `fs___FileSystemFromUri(uri)`: SET_VECTOR_ELT() can only be applied to a 'list', not a 'unknown type #28' Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-arkdb.R:221:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::nrow(arrow::open_dataset(paste0(dir, "/", "airlines"))) 5. └─arrow::open_dataset(paste0(dir, "/", "airlines")) 6. └─DatasetFactory$create(...) 7. └─arrow:::get_paths_and_filesystem(x, filesystem) 8. ├─filesystem %||% LocalFileSystem$create() 9. └─LocalFileSystem$create() 10. └─FileSystem$from_uri("file:///_") 11. └─arrow:::fs___FileSystemFromUri(uri) [ FAIL 1 | WARN 7 | SKIP 8 | PASS 46 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-arm64

Version: 0.0.19
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘arrow’ Flavor: r-oldrel-macos-x86_64

Version: 0.0.19
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘arrow’ Flavor: r-oldrel-macos-x86_64

Package codemeta

Current CRAN status: OK: 14

Package codemetar

Current CRAN status: OK: 14

Package contentid

Current CRAN status: OK: 14

Package duckdbfs

Current CRAN status: OK: 14

Package earthdatalogin

Current CRAN status: OK: 14

Package EcoNetGen

Current CRAN status: NOTE: 2, OK: 12

Version: 0.2.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’ The Description field contains <arXiv:1708.01242>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package EML

Current CRAN status: OK: 14

Package emld

Current CRAN status: OK: 14

Package gbifdb

Current CRAN status: NOTE: 2, OK: 12

Version: 1.0.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’ The BugReports field in DESCRIPTION has https://github.com/ropensci/gbifdb which should likely be https://github.com/ropensci/gbifdb/issues instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package knitcitations

Current CRAN status: OK: 14

Package minioclient

Current CRAN status: OK: 14

Package neonstore

Current CRAN status: NOTE: 11, OK: 3

Version: 0.5.1
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘neon_cloud.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package piggyback

Current CRAN status: OK: 14

Package pmc

Current CRAN status: OK: 14

Package rdflib

Current CRAN status: OK: 14

Package rfishbase

Current CRAN status: OK: 14

Package RNeXML

Current CRAN status: NOTE: 14

Version: 2.4.11
Check: Rd files
Result: NOTE checkRd: (-1) nexml_get.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:35: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package roxigraph

Current CRAN status: NOTE: 3, OK: 11

Version: 0.1.1
Check: installed package size
Result: NOTE installed size is 20.1Mb sub-directories of 1Mb or more: libs 19.2Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package sarsop

Current CRAN status: NOTE: 3, OK: 11

Additional issues

musl

Version: 0.6.16
Check: installed package size
Result: NOTE installed size is 5.3Mb sub-directories of 1Mb or more: bin 4.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package taxadb

Current CRAN status: NOTE: 11, OK: 3

Version: 0.2.1
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘parse_schema.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package taxalight

Current CRAN status: NOTE: 2, OK: 12

Version: 0.1.5
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’ The BugReports field in DESCRIPTION has https://github.com/cboettig/taxalight which should likely be https://github.com/cboettig/taxalight/issues instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package treebase

Current CRAN status: OK: 14

Package virtuoso

Current CRAN status: OK: 14