CRAN Package Check Results for Maintainer ‘Carl Boettiger <cboettig at gmail.com>’

Last updated on 2025-05-15 11:50:29 CEST.

Package	ERROR	NOTE	OK
arkdb		1	12
codemeta			13
codemetar		6	7
contentid			13
duckdbfs	1		12
earthdatalogin		10	3
EcoNetGen		2	11
EML		6	7
emld		5	8
gbifdb		2	11
knitcitations			13
minioclient			13
neonstore		10	3
piggyback			13
pmc			13
rdflib			13
rfigshare		13
rfishbase		10	3
RNeXML		13
sarsop		3	10
taxadb		10	3
taxalight		2	11
treebase			13
virtuoso			13

Package arkdb

Current CRAN status: NOTE: 1, OK: 12

Version: 0.0.18
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘arrow’ Flavor: r-oldrel-macos-x86_64

Version: 0.0.18
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘arrow’ Flavor: r-oldrel-macos-x86_64

Package codemeta

Current CRAN status: OK: 13

Package codemetar

Current CRAN status: NOTE: 6, OK: 7

Version: 0.3.5
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: create_codemeta.Rd: write_json write_codemeta.Rd: write_json Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Package contentid

Current CRAN status: OK: 13

Package duckdbfs

Current CRAN status: ERROR: 1, OK: 12

Version: 0.1.0
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(duckdbfs) > > > > > test_check("duckdbfs") [ FAIL 1 | WARN 0 | SKIP 15 | PASS 15 ] ══ Skipped tests (15) ══════════════════════════════════════════════════════════ • On CRAN (15): 'test-h3.R:4:3', 'test-open_dataset.R:16:3', 'test-open_dataset.R:37:3', 'test-open_dataset.R:60:3', 'test-open_dataset.R:71:3', 'test-secrets.R:4:1', 'test-spatial.R:4:3', 'test-spatial.R:22:3', 'test-spatial.R:43:3', 'test-spatial.R:74:3', 'test-write_dataset.R:6:3', 'test-write_dataset.R:37:3', 'test-write_dataset.R:62:3', 'test-write_dataset.R:81:3', 'test-write_dataset.R:126:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-load_extension.R:4:3'): extensions installation ──────────────── Error in `duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)`: rapi_execute: Failed to run query Error: Invalid Input Error: Initialization function "httpfs_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.2.2/linux_amd64_gcc4/httpfs.duckdb_extension" threw an exception: "Attempted to dereference unique_ptr that is NULL!" Backtrace: ▆ 1. ├─duckdbfs:::load_httpfs(nightly = FALSE, force = FALSE) at test-load_extension.R:4:3 2. │ └─duckdbfs:::load_extension(...) 3. │ ├─DBI::dbExecute(conn, glue::glue("LOAD '{extension}';")) 4. │ └─DBI::dbExecute(conn, glue::glue("LOAD '{extension}';")) 5. │ ├─DBI::dbSendStatement(conn, statement, ...) 6. │ └─DBI::dbSendStatement(conn, statement, ...) 7. │ ├─DBI::dbSendQuery(conn, statement, ...) 8. │ └─duckdb::dbSendQuery(conn, statement, ...) 9. │ └─duckdb (local) .local(conn, statement, ...) 10. │ └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow) 11. │ └─duckdb:::duckdb_execute(res) 12. │ └─duckdb:::rethrow_rapi_execute(...) 13. │ ├─rlang::try_fetch(...) 14. │ │ ├─base::tryCatch(...) 15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 18. │ │ └─base::withCallingHandlers(...) 19. │ └─duckdb:::rapi_execute(stmt, convert_opts) 20. └─base::.handleSimpleError(...) 21. └─rlang (local) h(simpleError(msg, call)) 22. └─handlers[[1L]](cnd) 23. └─duckdb:::rethrow_error_from_rapi(e, call) 24. └─rlang::abort(msg, call = call) [ FAIL 1 | WARN 0 | SKIP 15 | PASS 15 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Package earthdatalogin

Current CRAN status: NOTE: 10, OK: 3

Version: 0.0.2
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘edl_set_token.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package EcoNetGen

Current CRAN status: NOTE: 2, OK: 11

Version: 0.2.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’ The Description field contains <arXiv:1708.01242>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package EML

Current CRAN status: NOTE: 6, OK: 7

Version: 2.0.6.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: write_eml.Rd: write_xml Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0.6.1
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: write_eml.Rd: write_xml Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Package emld

Current CRAN status: NOTE: 5, OK: 8

Version: 0.5.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.5.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package gbifdb

Current CRAN status: NOTE: 2, OK: 11

Version: 1.0.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’ The BugReports field in DESCRIPTION has https://github.com/ropensci/gbifdb which should likely be https://github.com/ropensci/gbifdb/issues instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package knitcitations

Current CRAN status: OK: 13

Package minioclient

Current CRAN status: OK: 13

Package neonstore

Current CRAN status: NOTE: 10, OK: 3

Version: 0.5.1
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘neon_cloud.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package piggyback

Current CRAN status: OK: 13

Package pmc

Current CRAN status: OK: 13

Package rdflib

Current CRAN status: OK: 13

Package rfigshare

Current CRAN status: NOTE: 13

Version: 0.3.8
Check: Rd files
Result: NOTE checkRd: (-1) fs_search.Rd:76: Lost braces 76 | \\code{\link{fs_auth}} \code{\link{fs_browse}} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package rfishbase

Current CRAN status: NOTE: 10, OK: 3

Version: 5.0.1
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘common_names.R’ ‘distribution.R’ ‘fb_tbl.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package RNeXML

Current CRAN status: NOTE: 13

Version: 2.4.11
Check: Rd files
Result: NOTE checkRd: (-1) nexml_get.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:35: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package sarsop

Current CRAN status: NOTE: 3, OK: 10

Version: 0.6.16
Check: installed package size
Result: NOTE installed size is 5.3Mb sub-directories of 1Mb or more: bin 4.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package taxadb

Current CRAN status: NOTE: 10, OK: 3

Version: 0.2.1
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘parse_schema.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package taxalight

Current CRAN status: NOTE: 2, OK: 11

Version: 0.1.5
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’ The BugReports field in DESCRIPTION has https://github.com/cboettig/taxalight which should likely be https://github.com/cboettig/taxalight/issues instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package treebase

Current CRAN status: OK: 13

Package virtuoso

Current CRAN status: OK: 13