CRAN Package Check Results for Maintainer ‘Carl Boettiger <cboettig at gmail.com>’

Last updated on 2024-08-16 21:49:24 CEST.

Package	ERROR	NOTE	OK
arkdb	1	1	11
codemeta			13
codemetar		3	10
contentid			13
duckdbfs			13
earthdatalogin			13
EcoNetGen			13
EML		3	10
emld		13
gbifdb	1		12
knitcitations			13
minioclient			13
neonstore		2	11
piggyback			13
pmc			13
rdflib	4		9
rfigshare		10	3
rfishbase			13
RNeXML		10	3
sarsop		7	6
taxadb			13
taxalight			13
treebase			13
virtuoso			13

Package arkdb

Current CRAN status: ERROR: 1, NOTE: 1, OK: 11

Version: 0.0.18
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [44s/42s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 6. └─arkdb::ark(...) 7. └─arkdb:::ark_file(...) 8. └─arkdb:::keep_open(...) 9. └─streamable_table$write(data, con, omit_header = TRUE, filename = counter) 10. └─arrow::write_parquet(x, sink = path, ...) 11. ├─ParquetFileWriter$create(...) 12. │ └─arrow:::parquet___arrow___ParquetFileWriter__Open(...) 13. └─ParquetWriterProperties$create(...) 14. └─arrow:::parquet___WriterProperties___Builder__create() [ FAIL 3 | WARN 8 | SKIP 8 | PASS 36 ] Error: Test failures In addition: Warning message: Connection is garbage-collected, use dbDisconnect() to avoid this. Execution halted Flavor: r-release-macos-arm64

Version: 0.0.18
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘arrow’ Flavor: r-release-macos-x86_64

Version: 0.0.18
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘arrow’ Flavor: r-release-macos-x86_64

Package codemeta

Current CRAN status: OK: 13

Package codemetar

Current CRAN status: NOTE: 3, OK: 10

Version: 0.3.5
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: create_codemeta.Rd: write_json write_codemeta.Rd: write_json Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package contentid

Current CRAN status: OK: 13

Package duckdbfs

Current CRAN status: OK: 13

Package earthdatalogin

Current CRAN status: OK: 13

Package EcoNetGen

Current CRAN status: OK: 13

Package EML

Current CRAN status: NOTE: 3, OK: 10

Version: 2.0.6.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: write_eml.Rd: write_xml Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.0.6.1
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: write_eml.Rd: write_xml Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64

Package emld

Current CRAN status: NOTE: 13

Version: 0.5.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package gbifdb

Current CRAN status: ERROR: 1, OK: 12

Version: 1.0.0
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [1s/1s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test_gbifdb.R:30:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_gbifdb.R:16:3'): gbif_local() ────────────────────────────────── Error: This build of the arrow package does not support Datasets Backtrace: ▆ 1. └─gbifdb::gbif_local(path, backend = "arrow") at test_gbifdb.R:16:3 2. └─arrow::open_dataset(dir) 3. └─arrow:::stop_if_no_datasets() [ FAIL 1 | WARN 0 | SKIP 1 | PASS 2 ] Error: Test failures Execution halted Flavor: r-release-macos-arm64

Package knitcitations

Current CRAN status: OK: 13

Package minioclient

Current CRAN status: OK: 13

Package neonstore

Current CRAN status: NOTE: 2, OK: 11

Version: 0.5.1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘rhdf5’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package piggyback

Current CRAN status: OK: 13

Package pmc

Current CRAN status: OK: 13

Package rdflib

Current CRAN status: ERROR: 4, OK: 9

Version: 0.2.8
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘rdf_intro.Rmd’ using rmarkdown Quitting from lines 339-345 [unnamed-chunk-28] (rdf_intro.Rmd) Error: processing vignette 'rdf_intro.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘rdf_intro.Rmd’ SUMMARY: processing the following file failed: ‘rdf_intro.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.8
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘rdf_intro.Rmd’ using rmarkdown Quitting from lines 339-345 [unnamed-chunk-28] (rdf_intro.Rmd) Error: processing vignette 'rdf_intro.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘rdf_intro.Rmd’ SUMMARY: processing the following file failed: ‘rdf_intro.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package rfigshare

Current CRAN status: NOTE: 10, OK: 3

Version: 0.3.8
Check: Rd files
Result: NOTE checkRd: (-1) fs_search.Rd:76: Lost braces 76 | \\code{\link{fs_auth}} \code{\link{fs_browse}} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package rfishbase

Current CRAN status: OK: 13

Package RNeXML

Current CRAN status: NOTE: 10, OK: 3

Version: 2.4.11
Check: Rd files
Result: NOTE checkRd: (-1) nexml_get.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) nexml_get.Rd:35: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package sarsop

Current CRAN status: NOTE: 7, OK: 6

Additional issues

clang-UBSAN

Version: 0.6.15
Check: installed package size
Result: NOTE installed size is 6.6Mb sub-directories of 1Mb or more: bin 5.8Mb Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package taxadb

Current CRAN status: OK: 13

Package taxalight

Current CRAN status: OK: 13

Package treebase

Current CRAN status: OK: 13

Package virtuoso

Current CRAN status: OK: 13