Last updated on 2024-09-27 07:51:42 CEST.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| bbmle | 1 | 12 | ||
| broom.mixed | 9 | 4 | ||
| emdbook | 10 | 3 | ||
| gtools | 2 | 11 | ||
| margins | 13 | |||
| prediction | 13 | |||
| R2admb | 1 | 9 | 3 | |
| reformulas | 13 |
Current CRAN status: WARN: 1, OK: 12
Version: 1.0.25.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘mle2.Rnw’ using knitr
Error: processing vignette 'mle2.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'mle2.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.152 \hlkwd{library}\hldef
{(emdbook)}
?
! Emergency stop.
! Emergency stop.
l.152
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘mle2.Rnw’
--- re-building ‘quasi.Rnw’ using knitr
Error: processing vignette 'quasi.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'quasi.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.111 \hldef
{dfun} \hlkwb{<-} \hlkwa{function}\hldef{(}\hlkwc{object}\hldef{...
?
! Emergency stop.
l.111
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘quasi.Rnw’
SUMMARY: processing the following files failed:
‘mle2.Rnw’ ‘quasi.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Current CRAN status: ERROR: 9, NOTE: 4
Version: 0.2.9.5
Check: tests
Result: ERROR
Running ‘test-all.R’ [47s/56s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> test_check("broom.mixed")
Loading required package: broom.mixed
GAMLSS-RS iteration 1: Global Deviance = 4771.925
GAMLSS-CG iteration 1: Global Deviance = 4771.013
GAMLSS-CG iteration 2: Global Deviance = 4770.994
GAMLSS-CG iteration 3: Global Deviance = 4770.994
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-rstanarm.R:35:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-alltibbles.R:57:21'): (code run outside of `test_that()`) ──────
Error in `.requirePackage(package)`: unable to load required package 'rstan'
Backtrace:
▆
1. └─broom.mixed (local) testf("glance", z) at test-alltibbles.R:62:13
2. ├─testthat::expect_is(get(fn_str)(obj), "tbl_df") at test-alltibbles.R:57:21
3. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─get(fn_str)(obj)
6. └─broom.mixed:::glance.brmsfit(obj)
7. └─broom.mixed:::glance_stan(...)
8. ├─stats::sigma(x)
9. └─broom.mixed:::sigma.brmsfit(x)
10. ├─"sigma" %in% brms::variables(object)
11. ├─brms::variables(object)
12. └─brms:::variables.brmsfit(object)
13. └─methods (local) dimnames(x$fit)
14. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
15. └─methods:::.findInheritedMethods(classes, fdef, mtable)
16. └─methods::getClass(cl1, where = where, .Force = TRUE)
17. └─methods::getClassDef(Class, where)
18. └─methods:::.requirePackage(package)
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.9.5
Check: tests
Result: ERROR
Running ‘test-all.R’ [33s/41s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> test_check("broom.mixed")
Loading required package: broom.mixed
GAMLSS-RS iteration 1: Global Deviance = 4771.925
GAMLSS-CG iteration 1: Global Deviance = 4771.013
GAMLSS-CG iteration 2: Global Deviance = 4770.994
GAMLSS-CG iteration 3: Global Deviance = 4770.994
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-rstanarm.R:35:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-alltibbles.R:57:21'): (code run outside of `test_that()`) ──────
Error in `.requirePackage(package)`: unable to load required package 'rstan'
Backtrace:
▆
1. └─broom.mixed (local) testf("glance", z) at test-alltibbles.R:62:13
2. ├─testthat::expect_is(get(fn_str)(obj), "tbl_df") at test-alltibbles.R:57:21
3. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─get(fn_str)(obj)
6. └─broom.mixed:::glance.brmsfit(obj)
7. └─broom.mixed:::glance_stan(...)
8. ├─stats::sigma(x)
9. └─broom.mixed:::sigma.brmsfit(x)
10. ├─"sigma" %in% brms::variables(object)
11. ├─brms::variables(object)
12. └─brms:::variables.brmsfit(object)
13. └─methods (local) dimnames(x$fit)
14. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
15. └─methods:::.findInheritedMethods(classes, fdef, mtable)
16. └─methods::getClass(cl1, where = where, .Force = TRUE)
17. └─methods::getClassDef(Class, where)
18. └─methods:::.requirePackage(package)
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.9.5
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'dotwhisker', 'glmmADMB'
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.9.5
Check: installed package size
Result: NOTE
installed size is 5.5Mb
sub-directories of 1Mb or more:
extdata 5.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.2.9.5
Check: tests
Result: ERROR
Running ‘test-all.R’ [81s/212s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> test_check("broom.mixed")
Loading required package: broom.mixed
GAMLSS-RS iteration 1: Global Deviance = 4771.925
GAMLSS-CG iteration 1: Global Deviance = 4771.013
GAMLSS-CG iteration 2: Global Deviance = 4770.994
GAMLSS-CG iteration 3: Global Deviance = 4770.994
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-rstanarm.R:35:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-alltibbles.R:57:21'): (code run outside of `test_that()`) ──────
Error in `.requirePackage(package)`: unable to load required package 'rstan'
Backtrace:
▆
1. └─broom.mixed (local) testf("glance", z) at test-alltibbles.R:62:13
2. ├─testthat::expect_is(get(fn_str)(obj), "tbl_df") at test-alltibbles.R:57:21
3. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─get(fn_str)(obj)
6. └─broom.mixed:::glance.brmsfit(obj)
7. └─broom.mixed:::glance_stan(...)
8. ├─stats::sigma(x)
9. └─broom.mixed:::sigma.brmsfit(x)
10. ├─"sigma" %in% brms::variables(object)
11. ├─brms::variables(object)
12. └─brms:::variables.brmsfit(object)
13. └─methods (local) dimnames(x$fit)
14. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
15. └─methods:::.findInheritedMethods(classes, fdef, mtable)
16. └─methods::getClass(cl1, where = where, .Force = TRUE)
17. └─methods::getClassDef(Class, where)
18. └─methods:::.requirePackage(package)
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.9.5
Check: tests
Result: ERROR
Running ‘test-all.R’ [58s/85s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> test_check("broom.mixed")
Loading required package: broom.mixed
GAMLSS-RS iteration 1: Global Deviance = 4771.925
GAMLSS-CG iteration 1: Global Deviance = 4771.013
GAMLSS-CG iteration 2: Global Deviance = 4770.994
GAMLSS-CG iteration 3: Global Deviance = 4770.994
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-rstanarm.R:35:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-alltibbles.R:57:21'): (code run outside of `test_that()`) ──────
Error in `.requirePackage(package)`: unable to load required package 'rstan'
Backtrace:
▆
1. └─broom.mixed (local) testf("glance", z) at test-alltibbles.R:62:13
2. ├─testthat::expect_is(get(fn_str)(obj), "tbl_df") at test-alltibbles.R:57:21
3. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─get(fn_str)(obj)
6. └─broom.mixed:::glance.brmsfit(obj)
7. └─broom.mixed:::glance_stan(...)
8. ├─stats::sigma(x)
9. └─broom.mixed:::sigma.brmsfit(x)
10. ├─"sigma" %in% brms::variables(object)
11. ├─brms::variables(object)
12. └─brms:::variables.brmsfit(object)
13. └─methods (local) dimnames(x$fit)
14. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
15. └─methods:::.findInheritedMethods(classes, fdef, mtable)
16. └─methods::getClass(cl1, where = where, .Force = TRUE)
17. └─methods::getClassDef(Class, where)
18. └─methods:::.requirePackage(package)
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.9.5
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'glmmADMB'
Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.2.9.5
Check: tests
Result: ERROR
Running 'test-all.R' [45s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> test_check("broom.mixed")
Loading required package: broom.mixed
GAMLSS-RS iteration 1: Global Deviance = 4771.925
GAMLSS-CG iteration 1: Global Deviance = 4771.013
GAMLSS-CG iteration 2: Global Deviance = 4770.994
GAMLSS-CG iteration 3: Global Deviance = 4770.994
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-rstanarm.R:35:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-alltibbles.R:57:21'): (code run outside of `test_that()`) ──────
Error in `.requirePackage(package)`: unable to find required package 'rstan'
Backtrace:
▆
1. └─broom.mixed (local) testf("glance", z) at test-alltibbles.R:62:13
2. ├─testthat::expect_is(get(fn_str)(obj), "tbl_df") at test-alltibbles.R:57:21
3. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─get(fn_str)(obj)
6. └─broom.mixed:::glance.brmsfit(obj)
7. └─broom.mixed:::glance_stan(...)
8. ├─stats::sigma(x)
9. └─broom.mixed:::sigma.brmsfit(x)
10. ├─"sigma" %in% brms::variables(object)
11. ├─brms::variables(object)
12. └─brms:::variables.brmsfit(object)
13. └─methods (local) dimnames(x$fit)
14. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
15. └─methods:::.findInheritedMethods(classes, fdef, mtable)
16. └─methods::getClass(cl1, where = where, .Force = TRUE)
17. └─methods::getClassDef(Class, where)
18. └─methods:::.requirePackage(package)
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.2.9.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'broom_mixed_intro.rmd' using rmarkdown
Quitting from lines 65-79 [dwplot1] (broom_mixed_intro.rmd)
Error: processing vignette 'broom_mixed_intro.rmd' failed with diagnostics:
unable to find required package 'rstan'
--- failed re-building 'broom_mixed_intro.rmd'
SUMMARY: processing the following file failed:
'broom_mixed_intro.rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.2.9.5
Check: tests
Result: ERROR
Running ‘test-all.R’ [47s/68s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> test_check("broom.mixed")
Loading required package: broom.mixed
GAMLSS-RS iteration 1: Global Deviance = 4771.925
GAMLSS-CG iteration 1: Global Deviance = 4771.013
GAMLSS-CG iteration 2: Global Deviance = 4770.994
GAMLSS-CG iteration 3: Global Deviance = 4770.994
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-rstanarm.R:35:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-alltibbles.R:57:21'): (code run outside of `test_that()`) ──────
Error in `.requirePackage(package)`: unable to find required package 'rstan'
Backtrace:
▆
1. └─broom.mixed (local) testf("glance", z) at test-alltibbles.R:62:13
2. ├─testthat::expect_is(get(fn_str)(obj), "tbl_df") at test-alltibbles.R:57:21
3. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─get(fn_str)(obj)
6. └─broom.mixed:::glance.brmsfit(obj)
7. └─broom.mixed:::glance_stan(...)
8. ├─stats::sigma(x)
9. └─broom.mixed:::sigma.brmsfit(x)
10. ├─"sigma" %in% brms::variables(object)
11. ├─brms::variables(object)
12. └─brms:::variables.brmsfit(object)
13. └─methods (local) dimnames(x$fit)
14. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
15. └─methods:::.findInheritedMethods(classes, fdef, mtable)
16. └─methods::getClass(cl1, where = where, .Force = TRUE)
17. └─methods::getClassDef(Class, where)
18. └─methods:::.requirePackage(package)
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.2.9.5
Check: tests
Result: ERROR
Running ‘test-all.R’ [47s/67s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> test_check("broom.mixed")
Loading required package: broom.mixed
GAMLSS-RS iteration 1: Global Deviance = 4771.925
GAMLSS-CG iteration 1: Global Deviance = 4771.013
GAMLSS-CG iteration 2: Global Deviance = 4770.994
GAMLSS-CG iteration 3: Global Deviance = 4770.994
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-rstanarm.R:35:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-alltibbles.R:57:21'): (code run outside of `test_that()`) ──────
Error in `.requirePackage(package)`: unable to find required package 'rstan'
Backtrace:
▆
1. └─broom.mixed (local) testf("glance", z) at test-alltibbles.R:62:13
2. ├─testthat::expect_is(get(fn_str)(obj), "tbl_df") at test-alltibbles.R:57:21
3. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─get(fn_str)(obj)
6. └─broom.mixed:::glance.brmsfit(obj)
7. └─broom.mixed:::glance_stan(...)
8. ├─stats::sigma(x)
9. └─broom.mixed:::sigma.brmsfit(x)
10. ├─"sigma" %in% brms::variables(object)
11. ├─brms::variables(object)
12. └─brms:::variables.brmsfit(object)
13. └─methods (local) dimnames(x$fit)
14. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
15. └─methods:::.findInheritedMethods(classes, fdef, mtable)
16. └─methods::getClass(cl1, where = where, .Force = TRUE)
17. └─methods::getClassDef(Class, where)
18. └─methods:::.requirePackage(package)
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.9.5
Check: tests
Result: ERROR
Running 'test-all.R' [42s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> test_check("broom.mixed")
Loading required package: broom.mixed
GAMLSS-RS iteration 1: Global Deviance = 4771.925
GAMLSS-CG iteration 1: Global Deviance = 4771.013
GAMLSS-CG iteration 2: Global Deviance = 4770.994
GAMLSS-CG iteration 3: Global Deviance = 4770.994
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-rstanarm.R:35:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-alltibbles.R:57:21'): (code run outside of `test_that()`) ──────
Error in `.requirePackage(package)`: unable to find required package 'rstan'
Backtrace:
▆
1. └─broom.mixed (local) testf("glance", z) at test-alltibbles.R:62:13
2. ├─testthat::expect_is(get(fn_str)(obj), "tbl_df") at test-alltibbles.R:57:21
3. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─get(fn_str)(obj)
6. └─broom.mixed:::glance.brmsfit(obj)
7. └─broom.mixed:::glance_stan(...)
8. ├─stats::sigma(x)
9. └─broom.mixed:::sigma.brmsfit(x)
10. ├─"sigma" %in% brms::variables(object)
11. ├─brms::variables(object)
12. └─brms:::variables.brmsfit(object)
13. └─methods (local) dimnames(x$fit)
14. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
15. └─methods:::.findInheritedMethods(classes, fdef, mtable)
16. └─methods::getClass(cl1, where = where, .Force = TRUE)
17. └─methods::getClassDef(Class, where)
18. └─methods:::.requirePackage(package)
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.9.5
Check: tests
Result: ERROR
Running 'test-all.R' [59s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> test_check("broom.mixed")
Loading required package: broom.mixed
GAMLSS-RS iteration 1: Global Deviance = 4771.925
GAMLSS-CG iteration 1: Global Deviance = 4771.013
GAMLSS-CG iteration 2: Global Deviance = 4770.994
GAMLSS-CG iteration 3: Global Deviance = 4770.994
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-rstanarm.R:35:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-alltibbles.R:57:21'): (code run outside of `test_that()`) ──────
Error in `.requirePackage(package)`: unable to find required package 'rstan'
Backtrace:
▆
1. └─broom.mixed (local) testf("glance", z) at test-alltibbles.R:62:13
2. ├─testthat::expect_is(get(fn_str)(obj), "tbl_df") at test-alltibbles.R:57:21
3. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─get(fn_str)(obj)
6. └─broom.mixed:::glance.brmsfit(obj)
7. └─broom.mixed:::glance_stan(...)
8. ├─stats::sigma(x)
9. └─broom.mixed:::sigma.brmsfit(x)
10. ├─"sigma" %in% brms::variables(object)
11. ├─brms::variables(object)
12. └─brms:::variables.brmsfit(object)
13. └─methods (local) dimnames(x$fit)
14. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
15. └─methods:::.findInheritedMethods(classes, fdef, mtable)
16. └─methods::getClass(cl1, where = where, .Force = TRUE)
17. └─methods::getClassDef(Class, where)
18. └─methods:::.requirePackage(package)
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 237 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 1.3.13
Check: Rd files
Result: NOTE
checkRd: (-1) NEWS.Rd:194: Lost braces; missing escapes or markup?
194 | \item added {d,r}betabinom
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.3.13
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
apply2d.Rd: create_progress_bar
curve3d.Rd: create_progress_bar
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 3.9.5
Check: package dependencies
Result: NOTE
Suggests orphaned package: ‘taxize’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: WARN: 1, NOTE: 9, OK: 3
Version: 0.7.16.3
Check: Rd files
Result: NOTE
checkRd: (-1) do_admb.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) do_admb.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) do_admb.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_pars.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.7.16.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘R2admb.Rnw’ using knitr
Error: processing vignette 'R2admb.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'R2admb.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.121 \hldef
{fitted.model} \hlkwb{<-} \hlkwd{do_admb}\hldef{(fn,data,params,}
?
! Emergency stop.
! Emergency stop.
l.121
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘R2admb.Rnw’
SUMMARY: processing the following file failed:
‘R2admb.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Current CRAN status: OK: 13
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